RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 WSB1Q9Y6I7 421 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 PSMB11A5LHX3 300 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 G3V318 75 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 AP4M1O00189 453 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 UBE2KP61086 200 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 ZNF585BQ52M93 769 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 TBC1D26Q86UD7 250 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 FOXRED2Q8IWF2 684 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 SLC38A6Q8IZM9 456 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 CITED2Q99967 270 aaPredicted RBP15.36■□□□□ 0.05
CLN3-225ENST00000566824 FAM103A1Q9BTL3 118 aaKnown RBP15.36■□□□□ 0.05
CLN3-225ENST00000566824 HRASLSQ9HDD0 168 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 BATF3Q9NR55 127 aa15.36■□□□□ 0.05
CLN3-225ENST00000566824 ADARB2-AS1A8MUL3 147 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 DISC1C4P0D8 188 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 KCNAB3O43448 404 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 FBXO24O75426 580 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 S1PR2O95136 353 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 IGF1P05019 195 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 CFHR3Q02985 330 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 CATR1Q13166 79 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 LPCAT3Q6P1A2 487 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 LCNL1Q6ZST4 164 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 PPP1R27Q86WC6 154 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 AKIP1Q9NQ31 210 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 SLC2A9Q9NRM0 540 aa15.35■□□□□ 0.05
CLN3-225ENST00000566824 RPA2P15927 270 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 KIR2DS2P43631 304 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 GNB1P62873 340 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 C19orf54Q5BKX5 351 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 ZNF562Q6V9R5 426 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 SSX9Q7RTT3 188 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 CMTM1Q8IZ96 169 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 TEX45Q8NA69 505 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 CHPT1Q8WUD6 406 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 BORCS5Q969J3 196 aa15.34■□□□□ 0.05
CLN3-225ENST00000566824 RBFOX2O43251 390 aaKnown RBP eCLIP15.33■□□□□ 0.04
CLN3-225ENST00000566824 F2RP25116 425 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 LPAR6P43657 344 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 CD83Q01151 205 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 PRSS8Q16651 343 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 VMA21Q3ZAQ7 101 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 PUSL1Q8N0Z8 303 aaKnown RBP15.33■□□□□ 0.04
CLN3-225ENST00000566824 TOMM5Q8N4H5 51 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 GDPD1Q8N9F7 314 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 RTBDNQ9BSG5 229 aaPredicted RBP15.33■□□□□ 0.04
CLN3-225ENST00000566824 ZNF430Q9H8G1 570 aaPredicted RBP15.33■□□□□ 0.04
CLN3-225ENST00000566824 MCUBQ9NWR8 336 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 CMYA5Q8N3K9 4069 aa15.33■□□□□ 0.04
CLN3-225ENST00000566824 TRAV3A0A0B4J244 114 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 MYOD1P15172 320 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 PPIFP30405 207 aaKnown RBP15.32■□□□□ 0.04
CLN3-225ENST00000566824 PIGPP57054 158 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 RND3P61587 244 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 FXYD3Q14802 87 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 C10orf55Q5SWW7 151 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 GRPEL2Q8TAA5 225 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 RHOVQ96L33 236 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 SLC2A8Q9NY64 477 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 PTTG2Q9NZH5 202 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 NUBP2Q9Y5Y2 271 aa15.32■□□□□ 0.04
CLN3-225ENST00000566824 TRAV41A0A0B4J266 112 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 A0A1W2PRX2 142 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 MPPED1O15442 326 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 SOX15O60248 233 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 TSPAN15O95858 294 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 HPRT1P00492 218 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 IGKV1-39P01597 117 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 IGKV1D-39P04432 117 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 CTSDP07339 412 aaPredicted RBP15.31■□□□□ 0.04
CLN3-225ENST00000566824 CRIP2P52943 208 aaPredicted RBP15.31■□□□□ 0.04
CLN3-225ENST00000566824 ECSCRQ19T08 205 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 NSUN5P1Q3KNT7 163 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 ZNF57Q68EA5 555 aaPredicted RBP15.31■□□□□ 0.04
CLN3-225ENST00000566824 OR4A47Q6IF82 309 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 C18orf65Q6ZTR6 163 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 ABHD5Q8WTS1 349 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 ARPC1AQ92747 370 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 TP53RKQ96S44 253 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 PRRT1Q99946 306 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 C5orf66Q9H5L9 145 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 ZNF580Q9UK33 172 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 GPR132Q9UNW8 380 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 VSIG4Q9Y279 399 aa15.31■□□□□ 0.04
CLN3-225ENST00000566824 LINC00854A0A1B0GVQ3 168 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 KBTBD11O94819 623 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 OR2A4O95047 310 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 IL7P13232 177 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 VDAC1P21796 283 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 ZNF45Q02386 682 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 TNXAQ16473 311 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 ASPHD1Q5U4P2 390 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 MINDY2Q8NBR6 621 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 ADAD2Q8NCV1 583 aaKnown RBP15.3■□□□□ 0.04
CLN3-225ENST00000566824 LFNGQ8NES3 379 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 TMEM167AQ8TBQ9 72 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 ZFAND1Q8TCF1 268 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 CASTOR1Q8WTX7 329 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 R3HDM4Q96D70 268 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 ZNF486Q96H40 463 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms