RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 PAQR9Q6ZVX9 377 aa7.76□□□□□ -1.17
NIPBL-202ENST00000448238 XRN1Q8IZH2 1706 aaKnown RBP7.76□□□□□ -1.17
NIPBL-202ENST00000448238 NKX2-2O95096 273 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 APELAP0DMC3 54 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 TBR1Q16650 682 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 DRAM1Q8N682 238 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 VN1R2Q8NFZ6 395 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 GMLQ99445 158 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 WRAP73Q9P2S5 460 aaPredicted RBP7.75□□□□□ -1.17
NIPBL-202ENST00000448238 SOCS3O14543 225 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 ZP1P60852 638 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 WIPI1Q5MNZ9 446 aaPredicted RBP7.75□□□□□ -1.17
NIPBL-202ENST00000448238 OR11H4Q8NGC9 324 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 CHODLQ9H9P2 273 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 MMP25Q9NPA2 562 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 FZR1Q9UM11 496 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 ARFGEF2Q9Y6D5 1785 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 CTSVO60911 334 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 IGHV3-20A0A0C4DH32 117 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 KLK10O43240 276 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 IGHV3-13P01766 116 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 IGHV3-7P01780 117 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 SEC61GP60059 68 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 ZNF645Q8N7E2 425 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 LMO3Q8TAP4 145 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 DCTN5Q9BTE1 182 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 KCNE3Q9Y6H6 103 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 FAM90A27PA6NNH2 459 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 DPTQ07507 201 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 GATAD1Q8WUU5 269 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 LYZL2Q7Z4W2 148 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 PNKDQ8N490 385 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 MIXL1Q9H2W2 232 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 SIGLEC7Q9Y286 467 aa7.75□□□□□ -1.17
NIPBL-202ENST00000448238 CHKB-CPT1BH3BT56 60 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 MLNRO43193 412 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GLULP15104 373 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 DLK2Q6UY11 383 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 ST6GALNAC3Q8NDV1 305 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 SNHG12Q9BXW3 62 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GTSF1LQ9H1H1 148 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 BCL9O00512 1426 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 CSPG4Q6UVK1 2322 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 IFITM1P13164 125 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 CENPWQ5EE01 88 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 ZNF114Q8NC26 417 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 BADQ92934 168 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 MARVELD3Q96A59 401 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GRIFINA4D1Z8 144 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GFRA3O60609 400 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 CD160O95971 181 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 KIRREL2Q6UWL6 708 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 DEFB132Q7Z7B7 95 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 SPEM1Q8N4L4 309 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 E9PCH4 1651 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 KDM6BO15054 1643 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 N4BP2Q86UW6 1770 aaPredicted RBP7.74□□□□□ -1.17
NIPBL-202ENST00000448238 RPS27P42677 84 aaKnown RBP7.74□□□□□ -1.17
NIPBL-202ENST00000448238 FOXF1Q12946 379 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 TRA2AQ13595 282 aaKnown RBP eCLIP7.74□□□□□ -1.175e-6■■■■□ 19.4
NIPBL-202ENST00000448238 GVQW1Q8N7I0 195 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 MZB1Q8WU39 189 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 TMEM52BQ4KMG9 183 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 ARPC1AQ92747 370 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 J3QT63 122 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 CBLN1P23435 193 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 EAF1Q96JC9 268 aaPredicted RBP7.74□□□□□ -1.17
NIPBL-202ENST00000448238 ZNF488Q96MN9 340 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 TRAV9-2A0A087WT02 112 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GAGE12JA6NER3 117 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 HOXD4P09016 255 aaPredicted RBP7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GAGE1Q13065 139 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GAGE4Q13068 117 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GAGE5Q13069 117 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GAGE6Q13070 117 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 ASCL2Q99929 193 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 GSN-AS1Q9NRJ2 163 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 CCL28Q9NRJ3 127 aa7.74□□□□□ -1.17
NIPBL-202ENST00000448238 TRBV20-1A0A075B6N2 111 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 IGF2P01344 180 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 THY1P04216 161 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 IL6RP08887 468 aaPredicted RBP7.73□□□□□ -1.17
NIPBL-202ENST00000448238 SRD5A1P18405 259 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 DSCAML1Q8TD84 2053 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 GCSAMQ8N6F7 178 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 IL36BQ9NZH7 164 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 LAMA4Q16363 1823 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 LOC102723996A0A087X1L8 192 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 TRAV24A0A0B4J272 114 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 FXYD3Q14802 87 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 TMEM179BQ7Z7N9 219 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 RHNO1Q9BSD3 238 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 CLPSL1A2RUU4 121 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 CEACAM8P31997 349 aaPredicted RBP7.73□□□□□ -1.17
NIPBL-202ENST00000448238 ADMP35318 185 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 GAGE2AQ6NT46 116 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 TP53INP2Q8IXH6 220 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 PLEKHB2Q96CS7 222 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 TMEM126AQ9H061 195 aa7.73□□□□□ -1.17
NIPBL-202ENST00000448238 PRTN3P24158 256 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms