RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 CDX1P47902 265 aaPredicted RBP12.78□□□□□ -0.36
LSM6-201ENST00000296581 BRWD1-AS2P59051 145 aa12.78□□□□□ -0.36
LSM6-201ENST00000296581 PJVKQ0ZLH3 352 aa12.78□□□□□ -0.36
LSM6-201ENST00000296581 CLEC9AQ6UXN8 241 aa12.78□□□□□ -0.36
LSM6-201ENST00000296581 ZNF841Q6ZN19 808 aa12.78□□□□□ -0.36
LSM6-201ENST00000296581 FOXRED2Q8IWF2 684 aa12.78□□□□□ -0.36
LSM6-201ENST00000296581 LEAP2Q969E1 77 aa12.78□□□□□ -0.36
LSM6-201ENST00000296581 GPR146Q96CH1 333 aa12.78□□□□□ -0.36
LSM6-201ENST00000296581 POMT1Q9Y6A1 747 aa12.78□□□□□ -0.36
LSM6-201ENST00000296581 A0A1B0GU03 582 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 LINC00473A8K010 186 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 ST8SIA3O43173 380 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 KCNAB3O43448 404 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 IGKV1-5P01602 117 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 IGHV3-7P01780 117 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 SFTA3P0C7M3 94 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 CCL3L1P16619 93 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 DUTP33316 252 aaKnown RBP12.77□□□□□ -0.36
LSM6-201ENST00000296581 LPAR6P43657 344 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 DLX6P56179 175 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 OR2B8PP59922 312 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 GAMTQ14353 236 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 TMEM155Q4W5P6 130 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 DNLZQ5SXM8 178 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.77□□□□□ -0.36
LSM6-201ENST00000296581 MALSU1Q96EH3 234 aa12.77□□□□□ -0.36
LSM6-201ENST00000296581 DOPEY1Q5JWR5 2465 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 A0A1W2PPH5 198 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 MSGN1A6NI15 193 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 C17orf98A8MV24 154 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 PITX3O75364 302 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 PAX1P15863 534 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 USF2Q15853 346 aaPredicted RBP12.77□□□□□ -0.37
LSM6-201ENST00000296581 RAB1CQ92928 201 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 TIMD4Q96H15 378 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 PRO1933Q9H354 126 aa12.77□□□□□ -0.37
LSM6-201ENST00000296581 GAR1Q9NY12 217 aaKnown RBP12.77□□□□□ -0.37
LSM6-201ENST00000296581 E5RGE8 158 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 RAMP3O60896 148 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 G0S2P27469 103 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 NKX2-1P43699 371 aaPredicted RBP12.76□□□□□ -0.37
LSM6-201ENST00000296581 ID3Q02535 119 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 SLC25A48Q6ZT89 311 aaKnown RBP12.76□□□□□ -0.37
LSM6-201ENST00000296581 CHODLQ9H9P2 273 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 RPS10P5Q9NQ39 176 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 RALYQ9UKM9 306 aaKnown RBP12.76□□□□□ -0.37
LSM6-201ENST00000296581 RCL1Q9Y2P8 373 aaKnown RBP12.76□□□□□ -0.37
LSM6-201ENST00000296581 NSG2Q9Y328 171 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 F5H0A9 414 aaPredicted RBP12.76□□□□□ -0.37
LSM6-201ENST00000296581 HKR1P10072 659 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 NHLH2Q02577 135 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 COTL1Q14019 142 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 RPL39P5Q59GN2 51 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 ODF3L1Q8IXM7 274 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 C11orf1Q9H5F2 150 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 DOCK11Q5JSL3 2073 aa12.76□□□□□ -0.37
LSM6-201ENST00000296581 EPG5Q9HCE0 2579 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 M0R1X1 148 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 RAB29O14966 203 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 CDKN1AP38936 164 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 TMEM33P57088 247 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 NCR3LG1Q68D85 454 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 UBAC2Q8NBM4 344 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 CD300LFQ8TDQ1 290 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 ISOC2Q96AB3 205 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 TUBA4BQ9H853 241 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 PLEKHA2Q9HB19 425 aa12.75□□□□□ -0.37
LSM6-201ENST00000296581 SAA2-SAA4A0A096LPE2 208 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 P0C879 139 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 SAA2P0DJI9 122 aaPredicted RBP12.74□□□□□ -0.37
LSM6-201ENST00000296581 LINC00205P59089 165 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 ERVFRD-1P60508 538 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 TNFRSF9Q07011 255 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 CXorf66Q5JRM2 361 aaPredicted RBP12.74□□□□□ -0.37
LSM6-201ENST00000296581 Q6ZRM9 215 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 C1orf229Q6ZS94 237 aaPredicted RBP12.74□□□□□ -0.37
LSM6-201ENST00000296581 RNF141Q8WVD5 230 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 NEIL1Q96FI4 390 aaPredicted RBP12.74□□□□□ -0.37
LSM6-201ENST00000296581 MMP24Q9Y5R2 645 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 KIAA1324LA8MWY0 1029 aaPredicted RBP12.74□□□□□ -0.37
LSM6-201ENST00000296581 S1PR2O95136 353 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 RPL12P30050 165 aaKnown RBP12.74□□□□□ -0.37
LSM6-201ENST00000296581 P2RY1P47900 373 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 GNG10P50151 68 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 ZNF816Q0VGE8 651 aaPredicted RBP12.74□□□□□ -0.37
LSM6-201ENST00000296581 C8orf31Q8N9H6 132 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 OR8B3Q8NGG8 313 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 DDB2Q92466 427 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 RAB39BQ96DA2 213 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 OR8B2Q96RD0 313 aa12.74□□□□□ -0.37
LSM6-201ENST00000296581 RBFOX2O43251 390 aaKnown RBP eCLIP12.73□□□□□ -0.37
LSM6-201ENST00000296581 EPHA1P21709 976 aa12.73□□□□□ -0.37
LSM6-201ENST00000296581 RPP30P78346 268 aaKnown RBP12.73□□□□□ -0.37
LSM6-201ENST00000296581 LYG1Q8N1E2 194 aa12.73□□□□□ -0.37
LSM6-201ENST00000296581 OR10D4PQ8NGN7 298 aa12.73□□□□□ -0.37
LSM6-201ENST00000296581 C8orf46Q8TAG6 207 aa12.73□□□□□ -0.37
LSM6-201ENST00000296581 ZNF596Q8TC21 504 aa12.73□□□□□ -0.37
LSM6-201ENST00000296581 CACNG5Q9UF02 275 aa12.73□□□□□ -0.37
LSM6-201ENST00000296581 CACFD1Q9UGQ2 172 aa12.73□□□□□ -0.37
LSM6-201ENST00000296581 LRBAP50851 2863 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms