RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SLC17A3O00476 420 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 KBTBD11O94819 623 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 SOX8P57073 446 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 LINC00310P59036 64 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 MIC13Q5XKP0 118 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 SMDT1Q9H4I9 107 aa8.87□□□□□ -0.99
USP28-201ENST00000003302 SEPSECSQ9HD40 501 aaKnown RBP8.87□□□□□ -0.99
USP28-201ENST00000003302 MRPS18CQ9Y3D5 142 aaKnown RBP8.87□□□□□ -0.99
USP28-201ENST00000003302 RAI1Q7Z5J4 1906 aaPredicted RBP8.86□□□□□ -0.99
USP28-201ENST00000003302 A0A087X0M5 115 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 A0A1B0GX30 115 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 CYB5R2Q6BCY4 276 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 CYP2G1PQ6ZSU1 146 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 ZCCHC24Q8N2G6 241 aaKnown RBP8.86□□□□□ -0.99
USP28-201ENST00000003302 C9orf106Q8NAJ2 232 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 TRIB1Q96RU8 372 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 SPINK4O60575 86 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 FCGR3BO75015 233 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 MMP23AO75900 390 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 GYPAP02724 150 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 COX5BP10606 129 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 DDTP30046 118 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 GCH1P30793 250 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 TMEM241Q24JQ0 296 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 FAM78BQ5VT40 261 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 ZNF645Q8N7E2 425 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 TP53TG3Q9ULZ0 132 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 SMCO3A2RU48 225 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 IGHV3-48P01763 117 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 HBE1P02100 147 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 IL3RAP26951 378 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 TEX38Q6PEX7 206 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 TCEAL7Q9BRU2 100 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 PSMG3Q9BT73 122 aaPredicted RBP8.86□□□□□ -0.99
USP28-201ENST00000003302 GPR87Q9BY21 358 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 PKIBQ9C010 78 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 OPA3Q9H6K4 179 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 SIRT7Q9NRC8 400 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 LIN7CQ9NUP9 197 aaKnown RBP8.86□□□□□ -0.99
USP28-201ENST00000003302 SCO2A0A1W2PP80 73 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 NPIPB11E5RHQ5 1161 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 CECR9P0C854 216 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 LGALS4P56470 323 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 SLC35B1P78383 322 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 DEFA6Q01524 100 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 PRB3Q04118 309 aaPredicted RBP8.86□□□□□ -0.99
USP28-201ENST00000003302 WDR31Q8NA23 367 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 GALMQ96C23 342 aa8.86□□□□□ -0.99
USP28-201ENST00000003302 MUC6Q6W4X9 2439 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 TRGV5A0A0B4J1U4 118 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 WNT2P09544 360 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 GABRA6Q16445 453 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 CST9LP1Q5W188 147 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 LINC01551Q86U37 167 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 FDCSPQ8NFU4 85 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 RTL8AQ9BWD3 113 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 IGKV1D-17A0A075B6S4 117 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 C11orf94C9JXX5 98 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 VHLLQ6RSH7 139 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 KIR2DL2P43627 348 aaPredicted RBP8.85□□□□□ -0.99
USP28-201ENST00000003302 DUSP3P51452 185 aaPredicted RBP8.85□□□□□ -0.99
USP28-201ENST00000003302 DLX1P56177 255 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 HBG1P69891 147 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 HBG2P69892 147 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 PMS2P11Q13670 270 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 HES3Q5TGS1 186 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 ACP7Q6ZNF0 438 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 OPN3Q9H1Y3 402 aaPredicted RBP8.85□□□□□ -0.99
USP28-201ENST00000003302 HES4Q9HCC6 221 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 B4GALT7Q9UBV7 327 aa8.85□□□□□ -0.99
USP28-201ENST00000003302 C15orf65H3BRN8 121 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 SERF2P84101 59 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 OR5I1Q13606 314 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 OR13D1Q8NGV5 346 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 MS4A5Q9H3V2 200 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 YTHDF2Q9Y5A9 579 aaKnown RBP8.84□□□□□ -0.99
USP28-201ENST00000003302 H7BYZ3 331 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 K7EN84 100 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 SH2D1BO14796 132 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 TBC1D28Q2M2D7 210 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 DBX2Q6ZNG2 339 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 OR1P1Q8NH06 330 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 MGST2Q99735 147 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 NAT8Q9UHE5 227 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 DUSP13Q9UII6 198 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 WNK2Q9Y3S1 2297 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 ARL14EPLP0DKL9 152 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 SLC25A6P12236 298 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 HOXA6P31267 233 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 TREML4Q6UXN2 200 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 PYGO2Q9BRQ0 406 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 CHD8Q9HCK8 2581 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 TMEM183AQ8IXX5 376 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 RIMS4Q9H426 269 aaPredicted RBP8.84□□□□□ -0.99
USP28-201ENST00000003302 OR6C3Q9NZP0 311 aa8.84□□□□□ -0.99
USP28-201ENST00000003302 SPTBN1Q01082 2364 aaKnown RBP8.84□□□□□ -0.99
USP28-201ENST00000003302 IGKV1OR2-108A0A075B7D4 117 aa8.83□□□□□ -1
USP28-201ENST00000003302 CCL11P51671 97 aa8.83□□□□□ -1
USP28-201ENST00000003302 RUSC1-AS1Q66K80 236 aa8.83□□□□□ -1
USP28-201ENST00000003302 SRD5A3Q9H8P0 318 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms