RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	POM34	Q12445	299 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	FEN2	P25621	512 aa	Known RBP	4.43	□□□□□ -1.7
CUP9	YPL177C	PLC1	P32383	869 aa		4.43	□□□□□ -1.7
CUP9	YPL177C	BIT2	P38346	545 aa		4.43	□□□□□ -1.7
CUP9	YPL177C	YIL077C	P40508	320 aa		4.43	□□□□□ -1.7
CUP9	YPL177C	RNR4	P49723	345 aa	Known RBP	4.43	□□□□□ -1.7
CUP9	YPL177C	PEX14	P53112	341 aa		4.43	□□□□□ -1.7
CUP9	YPL177C	SEG1	Q04279	960 aa		4.43	□□□□□ -1.7
CUP9	YPL177C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.43	□□□□□ -1.7	not detected
CUP9	YPL177C	RPS9B	P05755	195 aa	Known RBP	4.42	□□□□□ -1.7
CUP9	YPL177C	THR1	P17423	357 aa	Known RBP	4.42	□□□□□ -1.7
CUP9	YPL177C	SEC6	P32844	805 aa		4.42	□□□□□ -1.7
CUP9	YPL177C	MUP3	P38734	546 aa		4.42	□□□□□ -1.7
CUP9	YPL177C	PIG2	P40187	538 aa		4.42	□□□□□ -1.7
CUP9	YPL177C	RFX1	P48743	811 aa		4.42	□□□□□ -1.7
CUP9	YPL177C	SPC105	P53148	917 aa		4.42	□□□□□ -1.7
CUP9	YPL177C	COX11	P19516	300 aa	Known RBP	4.41	□□□□□ -1.7
CUP9	YPL177C	SEC15	P22224	910 aa		4.41	□□□□□ -1.7
CUP9	YPL177C	KIN82	P25341	720 aa		4.41	□□□□□ -1.7
CUP9	YPL177C	HEM12	P32347	362 aa	Predicted RBP	4.41	□□□□□ -1.7
CUP9	YPL177C	HXT4	P32467	576 aa		4.41	□□□□□ -1.7
CUP9	YPL177C	COS111	P38308	924 aa		4.41	□□□□□ -1.7
CUP9	YPL177C	PXA1	P41909	870 aa		4.41	□□□□□ -1.7
CUP9	YPL177C	BNA3	P47039	444 aa	Known RBP	4.41	□□□□□ -1.7
CUP9	YPL177C	TAF4	P50105	388 aa		4.41	□□□□□ -1.7
CUP9	YPL177C	ECM38	Q05902	660 aa	Predicted RBP	4.41	□□□□□ -1.7
CUP9	YPL177C	NGL1	Q08213	363 aa	Known RBP	4.41	□□□□□ -1.7
CUP9	YPL177C	CHS5	Q12114	671 aa	Known RBP	4.41	□□□□□ -1.7
CUP9	YPL177C	DGR2	P32330	852 aa		4.4	□□□□□ -1.71
CUP9	YPL177C	YHR033W	P38690	423 aa		4.4	□□□□□ -1.71
CUP9	YPL177C	GAT1	P43574	510 aa		4.4	□□□□□ -1.71
CUP9	YPL177C	IOC4	Q04213	475 aa		4.4	□□□□□ -1.71
CUP9	YPL177C	YFT2	Q06676	274 aa		4.4	□□□□□ -1.71
CUP9	YPL177C	USV1	Q12132	391 aa		4.4	□□□□□ -1.71
CUP9	YPL177C	KAR1	P11927	433 aa		4.39	□□□□□ -1.71
CUP9	YPL177C	PRP28	P23394	588 aa		4.39	□□□□□ -1.71
CUP9	YPL177C	PRP22	P24384	1145 aa	Known RBP	4.39	□□□□□ -1.71
CUP9	YPL177C	PRE4	P30657	266 aa		4.39	□□□□□ -1.71
CUP9	YPL177C	MF(ALPHA)2	P32435	120 aa		4.39	□□□□□ -1.71
CUP9	YPL177C	SET3	P36124	751 aa		4.39	□□□□□ -1.71
CUP9	YPL177C	SLD3	P53135	668 aa		4.39	□□□□□ -1.71
CUP9	YPL177C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.38	□□□□□ -1.71	not detected
CUP9	YPL177C	FUB1	P25659	250 aa		4.38	□□□□□ -1.71
CUP9	YPL177C	CDS1	P38221	457 aa		4.38	□□□□□ -1.71
CUP9	YPL177C	YHR097C	P38809	366 aa	Known RBP	4.38	□□□□□ -1.71
CUP9	YPL177C	MPS3	P47069	682 aa		4.38	□□□□□ -1.71
CUP9	YPL177C	PEX8	P53248	589 aa		4.38	□□□□□ -1.71
CUP9	YPL177C	SPO1	P53541	631 aa		4.38	□□□□□ -1.71
CUP9	YPL177C	YNL034W	P53963	612 aa		4.38	□□□□□ -1.71
CUP9	YPL177C	YNL018C	P53976	612 aa		4.38	□□□□□ -1.71
CUP9	YPL177C	TUP1	P16649	713 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	MSS1	P32559	526 aa	Predicted RBP	4.37	□□□□□ -1.71
CUP9	YPL177C	MTC7	P32633	139 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	CRG1	P38892	291 aa	RIP-Chip data	4.37	□□□□□ -1.71	not detected
CUP9	YPL177C	EAF5	P39995	279 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	PEA2	P40091	420 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	LTP1	P40347	161 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	TIM50	Q02776	476 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	NSE5	Q03718	556 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	SND1	Q04007	877 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	PPN1	Q04119	674 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	PHM6	Q05637	104 aa		4.37	□□□□□ -1.71
CUP9	YPL177C	CWC2	Q12046	339 aa	Predicted RBP	4.37	□□□□□ -1.71
CUP9	YPL177C	CLF1	Q12309	687 aa	Predicted RBP	4.37	□□□□□ -1.71
CUP9	YPL177C	YEL076C-A	P0CX16	216 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	YLR464W	P0CX17	216 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	GRX7	P38068	203 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	YEL076C	P39971	216 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	FTR1	P40088	404 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	KHA1	P40309	873 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	PRM2	P40534	656 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	IRC5	P43610	853 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	YGR151C	P53287	111 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	TGL2	P54857	326 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	YDL086W	Q07505	273 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	MPD2	Q99316	277 aa		4.36	□□□□□ -1.71
CUP9	YPL177C	ERG11	P10614	530 aa		4.35	□□□□□ -1.71
CUP9	YPL177C	RMA1	P36001	430 aa	Known RBP	4.35	□□□□□ -1.71
CUP9	YPL177C	GMH1	P36125	273 aa		4.35	□□□□□ -1.71
CUP9	YPL177C	CTP1	P38152	299 aa		4.35	□□□□□ -1.71
CUP9	YPL177C	SRP68	P38687	599 aa	Known RBP	4.35	□□□□□ -1.71
CUP9	YPL177C	TMN3	P40071	706 aa		4.35	□□□□□ -1.71
CUP9	YPL177C	EMP65	P40085	556 aa		4.35	□□□□□ -1.71
CUP9	YPL177C	ENP2	P48234	707 aa	Known RBP	4.35	□□□□□ -1.71
CUP9	YPL177C	NMA2	P53204	395 aa		4.35	□□□□□ -1.71
CUP9	YPL177C	PEX15	Q08215	383 aa		4.35	□□□□□ -1.71
CUP9	YPL177C	YOR378W	Q08902	515 aa		4.35	□□□□□ -1.71
CUP9	YPL177C	HMG2	P12684	1045 aa		4.34	□□□□□ -1.71
CUP9	YPL177C	EHT1	P38295	451 aa		4.34	□□□□□ -1.71
CUP9	YPL177C	KSP1	P38691	1029 aa	Known RBP	4.34	□□□□□ -1.71
CUP9	YPL177C	MIT1	P40002	666 aa		4.34	□□□□□ -1.71
CUP9	YPL177C	PGK1	P00560	416 aa	Known RBP	4.33	□□□□□ -1.72
CUP9	YPL177C	PTP1	P25044	335 aa		4.33	□□□□□ -1.72
CUP9	YPL177C	NTH1	P32356	751 aa		4.33	□□□□□ -1.72
CUP9	YPL177C	ELF1	P36053	145 aa		4.33	□□□□□ -1.72
CUP9	YPL177C	YMC2	P38087	329 aa		4.33	□□□□□ -1.72
CUP9	YPL177C	YDL183C	P48569	320 aa		4.33	□□□□□ -1.72
CUP9	YPL177C	SCS3	P53012	380 aa		4.33	□□□□□ -1.72
CUP9	YPL177C	MTD1	Q02046	320 aa	Known RBP	4.33	□□□□□ -1.72
CUP9	YPL177C	FDC1	Q03034	503 aa		4.33	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms