RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 FOSBP53539 338 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 FBXL16Q8N461 479 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 RBSNQ9H1K0 784 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 RRAGDQ9NQL2 400 aaPredicted RBP18.43■□□□□ 0.54
CLN3-251ENST00000636853 LRP2BPQ9P2M1 347 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 COL24A1Q17RW2 1714 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 RFC4P35249 363 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 NASPP49321 788 aaPredicted RBP18.43■□□□□ 0.54
CLN3-251ENST00000636853 LRSAM1Q6UWE0 723 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 TPTE2Q6XPS3 522 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 FAM196AQ6ZSG2 479 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 SYAP1Q96A49 352 aaPredicted RBP18.43■□□□□ 0.54
CLN3-251ENST00000636853 H3BQV1 296 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 UBE4AQ14139 1066 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 CSPP1Q1MSJ5 1256 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 IFFO2Q5TF58 517 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 EPB41L4AQ9HCS5 686 aaPredicted RBP18.42■□□□□ 0.54
CLN3-251ENST00000636853 LRRC4BQ9NT99 713 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 C4BP0C0L5 1744 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 EP400Q96L91 3159 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 ZNF804BA4D1E1 1349 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 PATL2C9JE40 543 aaKnown RBP18.42■□□□□ 0.54
CLN3-251ENST00000636853 RPS8P62241 208 aaKnown RBP18.42■□□□□ 0.54
CLN3-251ENST00000636853 KRT85P78386 507 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 TRAPPC3LQ5T215 181 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 ABCF2Q9UG63 623 aa18.42■□□□□ 0.54
CLN3-251ENST00000636853 PRKAB2O43741 272 aa18.41■□□□□ 0.54
CLN3-251ENST00000636853 EVCP57679 992 aa18.41■□□□□ 0.54
CLN3-251ENST00000636853 TRDNQ13061 729 aa18.41■□□□□ 0.54
CLN3-251ENST00000636853 RAB11FIP4Q86YS3 637 aa18.41■□□□□ 0.54
CLN3-251ENST00000636853 IFNL3Q8IZI9 196 aa18.41■□□□□ 0.54
CLN3-251ENST00000636853 LCORLQ8N3X6 602 aa18.41■□□□□ 0.54
CLN3-251ENST00000636853 MIGA1Q8NAN2 632 aa18.41■□□□□ 0.54
CLN3-251ENST00000636853 TFIP11Q9UBB9 837 aaKnown RBP18.41■□□□□ 0.54
CLN3-251ENST00000636853 C4AP0C0L4 1744 aa18.41■□□□□ 0.54
CLN3-251ENST00000636853 KLF18A0A0U1RQI7 1052 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 NPHP1O15259 732 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 TTC6Q86TZ1 520 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 INCENPQ9NQS7 918 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 COL1A1P02452 1464 aaPredicted RBP18.4■□□□□ 0.54
CLN3-251ENST00000636853 KLRK1P26718 216 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 CLCN1P35523 988 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 HMGN5P82970 282 aaKnown RBP18.4■□□□□ 0.54
CLN3-251ENST00000636853 CAVIN4Q5BKX8 364 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 CYB5R4Q7L1T6 521 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 VPS37DQ86XT2 251 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 FAM84BQ96KN1 310 aaPredicted RBP18.4■□□□□ 0.54
CLN3-251ENST00000636853 NAPBQ9H115 298 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 GNL3LQ9NVN8 582 aaKnown RBP18.4■□□□□ 0.54
CLN3-251ENST00000636853 SALL1Q9NSC2 1324 aa18.4■□□□□ 0.54
CLN3-251ENST00000636853 GSG1L2A8MUP6 293 aa18.39■□□□□ 0.54
CLN3-251ENST00000636853 B4E1Z4 1266 aa18.39■□□□□ 0.54
CLN3-251ENST00000636853 RESTQ13127 1097 aa18.39■□□□□ 0.54
CLN3-251ENST00000636853 ALX1Q15699 326 aa18.39■□□□□ 0.54
CLN3-251ENST00000636853 BCL11BQ9C0K0 894 aaPredicted RBP18.39■□□□□ 0.54
CLN3-251ENST00000636853 QTRT2Q9H974 415 aaKnown RBP18.39■□□□□ 0.54
CLN3-251ENST00000636853 GOLGA8BA8MQT2 603 aa18.39■□□□□ 0.53
CLN3-251ENST00000636853 HPS5Q9UPZ3 1129 aa18.39■□□□□ 0.53
CLN3-251ENST00000636853 SLC4A4Q9Y6R1 1079 aa18.39■□□□□ 0.53
CLN3-251ENST00000636853 NEDD4P46934 1319 aa18.38■□□□□ 0.53
CLN3-251ENST00000636853 CYP7A1P22680 504 aa18.38■□□□□ 0.53
CLN3-251ENST00000636853 CTDSPL2Q05D32 466 aa18.38■□□□□ 0.53
CLN3-251ENST00000636853 ADGRA1Q86SQ6 560 aa18.38■□□□□ 0.53
CLN3-251ENST00000636853 RAI14Q9P0K7 980 aa18.38■□□□□ 0.53
CLN3-251ENST00000636853 TM4SF1P30408 202 aa18.38■□□□□ 0.53
CLN3-251ENST00000636853 NFIXQ14938 502 aa18.38■□□□□ 0.53
CLN3-251ENST00000636853 WDR19Q8NEZ3 1342 aa18.37■□□□□ 0.53
CLN3-251ENST00000636853 GUCY1B3Q02153 619 aa18.37■□□□□ 0.53
CLN3-251ENST00000636853 CCDC183Q5T5S1 534 aa18.37■□□□□ 0.53
CLN3-251ENST00000636853 TFCP2L1Q9NZI6 479 aa18.37■□□□□ 0.53
CLN3-251ENST00000636853 FDPSP14324 419 aaKnown RBP18.37■□□□□ 0.53
CLN3-251ENST00000636853 KIF3AQ9Y496 699 aa18.37■□□□□ 0.53
CLN3-251ENST00000636853 TACC3Q9Y6A5 838 aa18.37■□□□□ 0.53
CLN3-251ENST00000636853 ZMYM6O95789 1325 aa18.36■□□□□ 0.53
CLN3-251ENST00000636853 PNPLA7Q6ZV29 1317 aa18.36■□□□□ 0.53
CLN3-251ENST00000636853 TNRC6CQ9HCJ0 1690 aaKnown RBP18.36■□□□□ 0.53
CLN3-251ENST00000636853 CARMIL3Q8ND23 1372 aa18.36■□□□□ 0.53
CLN3-251ENST00000636853 TDO2P48775 406 aa18.36■□□□□ 0.53
CLN3-251ENST00000636853 SPATA32Q96LK8 384 aa18.36■□□□□ 0.53
CLN3-251ENST00000636853 ANGEL1Q9UNK9 670 aaKnown RBP18.36■□□□□ 0.53
CLN3-251ENST00000636853 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.35■□□□□ 0.53
CLN3-251ENST00000636853 NAA16Q6N069 864 aaPredicted RBP18.35■□□□□ 0.53
CLN3-251ENST00000636853 FBXO33Q7Z6M2 555 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 SLC51AQ86UW1 340 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 STK11IPQ8N1F8 1099 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 SCAND2PQ9GZW5 306 aaPredicted RBP18.35■□□□□ 0.53
CLN3-251ENST00000636853 ZSCAN16Q9H4T2 348 aaPredicted RBP18.35■□□□□ 0.53
CLN3-251ENST00000636853 SENP2Q9HC62 589 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 CHD4Q14839 1912 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 SH2B2O14492 632 aaPredicted RBP18.35■□□□□ 0.53
CLN3-251ENST00000636853 GNAT2P19087 354 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 RNF214Q8ND24 703 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 LEO1Q8WVC0 666 aaPredicted RBP18.35■□□□□ 0.53
CLN3-251ENST00000636853 CHMP4CQ96CF2 233 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 TSPY26PQ9H489 355 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 ELP1O95163 1332 aa18.35■□□□□ 0.53
CLN3-251ENST00000636853 SDR42E1Q8WUS8 393 aa18.34■□□□□ 0.53
CLN3-251ENST00000636853 NACAP1Q9BZK3 213 aa18.34■□□□□ 0.53
CLN3-251ENST00000636853 ANKRD2Q9GZV1 360 aa18.34■□□□□ 0.53
CLN3-251ENST00000636853 RXRAP19793 462 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms