RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MAP9Q49MG5 647 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 STAMQ92783 540 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 UHRF1BP1LA0JNW5 1464 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 SALL3Q9BXA9 1300 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 TRIM66O15016 1216 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 COL9A3Q14050 684 aaPredicted RBP12.6□□□□□ -0.39
CLN3-244ENST00000636147 WWC2Q6AWC2 1192 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 NFATC2IPQ8NCF5 419 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 DDX21Q9NR30 783 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLN3-244ENST00000636147 EFCAB6Q5THR3 1501 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 MINDY4BA8MYZ0 360 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 RNF113AO15541 343 aaKnown RBP12.6□□□□□ -0.39
CLN3-244ENST00000636147 AKAP4Q5JQC9 854 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 NBPF11Q86T75 865 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 NAPBQ9H115 298 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 PHF8Q9UPP1 1060 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 PCDHA5Q9Y5H7 936 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 SHROOM2Q13796 1616 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 SBNO1A3KN83 1393 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 METP08581 1390 aa12.6□□□□□ -0.39
CLN3-244ENST00000636147 CDK12Q9NYV4 1490 aaPredicted RBP12.59□□□□□ -0.39
CLN3-244ENST00000636147 TMEM232C9JQI7 657 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 MYO1CO00159 1063 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 ST3GAL1Q11201 340 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 ADAM21Q9UKJ8 722 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 RRP15Q9Y3B9 282 aaKnown RBP12.59□□□□□ -0.39
CLN3-244ENST00000636147 A0A1B0GUL7 405 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 ATP5JP18859 108 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 RNF187Q5TA31 235 aaPredicted RBP12.59□□□□□ -0.39
CLN3-244ENST00000636147 NYAP1Q6ZVC0 841 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 NUTM2AQ8IVF1 878 aaPredicted RBP12.59□□□□□ -0.39
CLN3-244ENST00000636147 LINC00301Q8NCQ3 95 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 UBAC1Q9BSL1 405 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 YEATS4O95619 227 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 SPECC1LQ69YQ0 1117 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 VPS37DQ86XT2 251 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 AIFM3Q96NN9 605 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 VPS16Q9H269 839 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 MAPK8IP1Q9UQF2 711 aa12.59□□□□□ -0.39
CLN3-244ENST00000636147 CYP2C19P33261 490 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 KRT40Q6A162 431 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 GPIHBP1Q8IV16 184 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 FAN1Q9Y2M0 1017 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 ADCY9O60503 1353 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 COBLO75128 1261 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 GCKRQ14397 625 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 RNMTO43148 476 aaKnown RBP12.58□□□□□ -0.4
CLN3-244ENST00000636147 MARCH6O60337 910 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 FBXO18Q8NFZ0 1043 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 CCDC47Q96A33 483 aaKnown RBP12.58□□□□□ -0.4
CLN3-244ENST00000636147 ZKSCAN3Q9BRR0 538 aa12.58□□□□□ -0.4
CLN3-244ENST00000636147 HSPD1P10809 573 aaKnown RBP12.57□□□□□ -0.4
CLN3-244ENST00000636147 RRAGBQ5VZM2 374 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 KRI1Q8N9T8 703 aaKnown RBP12.57□□□□□ -0.4
CLN3-244ENST00000636147 WASF1Q92558 559 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 IRX2Q9BZI1 471 aaPredicted RBP12.57□□□□□ -0.4
CLN3-244ENST00000636147 RTEL1Q9NZ71 1219 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 TCHHQ07283 1943 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 B4E1Z4 1266 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 GIGYF1O75420 1035 aaPredicted RBP12.57□□□□□ -0.4
CLN3-244ENST00000636147 ENOX2Q16206 610 aaKnown RBP12.57□□□□□ -0.4
CLN3-244ENST00000636147 SLC9C2Q5TAH2 1124 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 CC2D1AQ6P1N0 951 aaPredicted RBP12.57□□□□□ -0.4
CLN3-244ENST00000636147 ANKRD24Q8TF21 1146 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 DPF2Q92785 391 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 SLF1Q9BQI6 1058 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 SHPRHQ149N8 1683 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 ARHGEF10O15013 1369 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 TXLNAP40222 546 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 OSBPL5Q9H0X9 879 aaPredicted RBP12.57□□□□□ -0.4
CLN3-244ENST00000636147 CEP131Q9UPN4 1083 aa12.57□□□□□ -0.4
CLN3-244ENST00000636147 COL3A1P02461 1466 aaPredicted RBP12.57□□□□□ -0.4
CLN3-244ENST00000636147 ZEB2O60315 1214 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 CMA1P23946 247 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 USP8P40818 1118 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 FMR1NBQ8N0W7 255 aaPredicted RBP12.56□□□□□ -0.4
CLN3-244ENST00000636147 GOLGA5Q8TBA6 731 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 RABGGTAQ92696 567 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 WDR24Q96S15 920 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 KCNJ14Q9UNX9 436 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 EBAG9O00559 213 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 ACTN2P35609 894 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 PLA2G4AP47712 749 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 CDR1P51861 262 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 PIP4K2BP78356 416 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 E2F4Q16254 413 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 RGS22Q8NE09 1264 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.56□□□□□ -0.4
CLN3-244ENST00000636147 CARMIL3Q8ND23 1372 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 PHLPP2Q6ZVD8 1323 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 GRAMD1CQ8IYS0 662 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 SERTAD1Q9UHV2 236 aa12.56□□□□□ -0.4
CLN3-244ENST00000636147 A0A1W2PQ27 194 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 A0A1W2PQ64 194 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 A0A1W2PQD8 194 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 ZMYND10O75800 440 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 GPTP24298 496 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 NACAP1Q9BZK3 213 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 ABCF2Q9UG63 623 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 ATP7BP35670 1465 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms