RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 IGHMBP2P38935 993 aaKnown RBP17.39■□□□□ 0.37
CLN3-235ENST00000568497 IFIT5Q13325 482 aaKnown RBP17.39■□□□□ 0.37
CLN3-235ENST00000568497 LRRC24Q50LG9 513 aa17.39■□□□□ 0.37
CLN3-235ENST00000568497 TAF7LQ5H9L4 462 aa17.39■□□□□ 0.37
CLN3-235ENST00000568497 CUL9Q8IWT3 2517 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 UNCXA6NJT0 531 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 IPO8O15397 1037 aaKnown RBP17.38■□□□□ 0.37
CLN3-235ENST00000568497 STRIP1Q5VSL9 837 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 TXNRD3Q86VQ6 643 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 KIAA0825Q8IV33 1275 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 ITPRIPQ8IWB1 547 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 ARHGAP45Q92619 1136 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 DEFB129Q9H1M3 183 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 PA2G4Q9UQ80 394 aaKnown RBP17.38■□□□□ 0.37
CLN3-235ENST00000568497 MED23Q9ULK4 1368 aa17.38■□□□□ 0.37
CLN3-235ENST00000568497 COL1A1P02452 1464 aaPredicted RBP17.37■□□□□ 0.37
CLN3-235ENST00000568497 CHRNDQ07001 517 aa17.37■□□□□ 0.37
CLN3-235ENST00000568497 CCDC57Q2TAC2 916 aa17.37■□□□□ 0.37
CLN3-235ENST00000568497 FTSJ3Q8IY81 847 aaKnown RBP17.37■□□□□ 0.37
CLN3-235ENST00000568497 DZIP1LQ8IYY4 767 aaKnown RBP17.37■□□□□ 0.37
CLN3-235ENST00000568497 SH3TC2Q8TF17 1288 aa17.37■□□□□ 0.37
CLN3-235ENST00000568497 ZBED3Q96IU2 234 aaPredicted RBP17.37■□□□□ 0.37
CLN3-235ENST00000568497 MPHOSPH8Q99549 860 aa17.37■□□□□ 0.37
CLN3-235ENST00000568497 BSDC1Q9NW68 430 aaPredicted RBP17.37■□□□□ 0.37
CLN3-235ENST00000568497 ZNF646O15015 1829 aaPredicted RBP17.36■□□□□ 0.37
CLN3-235ENST00000568497 RABL6Q3YEC7 729 aaPredicted RBP17.36■□□□□ 0.37
CLN3-235ENST00000568497 SIL1Q9H173 461 aa17.36■□□□□ 0.37
CLN3-235ENST00000568497 CNNM1Q9NRU3 951 aa17.36■□□□□ 0.37
CLN3-235ENST00000568497 RFX5P48382 616 aaPredicted RBP17.35■□□□□ 0.37
CLN3-235ENST00000568497 PTPN18Q99952 460 aa17.35■□□□□ 0.37
CLN3-235ENST00000568497 COG6Q9Y2V7 657 aa17.35■□□□□ 0.37
CLN3-235ENST00000568497 SSC5DA1L4H1 1573 aa17.35■□□□□ 0.37
CLN3-235ENST00000568497 TESPA1A2RU30 521 aaPredicted RBP17.34■□□□□ 0.37
CLN3-235ENST00000568497 GJA5P36382 358 aa17.34■□□□□ 0.37
CLN3-235ENST00000568497 IREB2P48200 963 aaKnown RBP17.34■□□□□ 0.37
CLN3-235ENST00000568497 RANBP2P49792 3224 aaKnown RBP17.34■□□□□ 0.37
CLN3-235ENST00000568497 MNX1P50219 401 aaPredicted RBP17.34■□□□□ 0.37
CLN3-235ENST00000568497 TAF1CQ15572 869 aaPredicted RBP17.34■□□□□ 0.37
CLN3-235ENST00000568497 LDHAL6AQ6ZMR3 332 aa17.34■□□□□ 0.37
CLN3-235ENST00000568497 COA1Q9GZY4 146 aa17.34■□□□□ 0.37
CLN3-235ENST00000568497 JAG2Q9Y219 1238 aa17.34■□□□□ 0.37
CLN3-235ENST00000568497 A0A1B0GUL6 1792 aa17.33■□□□□ 0.37
CLN3-235ENST00000568497 DLGAP5Q15398 846 aa17.33■□□□□ 0.36
CLN3-235ENST00000568497 SUPT20HL1Q3ZLR7 823 aa17.33■□□□□ 0.36
CLN3-235ENST00000568497 TTLL5Q6EMB2 1281 aa17.33■□□□□ 0.36
CLN3-235ENST00000568497 ZFYVE28Q9HCC9 887 aa17.33■□□□□ 0.36
CLN3-235ENST00000568497 PPP2R3BQ9Y5P8 575 aa17.33■□□□□ 0.36
CLN3-235ENST00000568497 COL6A3P12111 3177 aa17.32■□□□□ 0.36
CLN3-235ENST00000568497 ANKRD13AQ8IZ07 590 aa17.32■□□□□ 0.36
CLN3-235ENST00000568497 HTATIP2Q9BUP3 242 aa17.32■□□□□ 0.36
CLN3-235ENST00000568497 ELP3Q9H9T3 547 aa17.32■□□□□ 0.36
CLN3-235ENST00000568497 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.32■□□□□ 0.36
CLN3-235ENST00000568497 A0A0C4DFX4 3053 aa17.32■□□□□ 0.36
CLN3-235ENST00000568497 PNMA6EA0A0J9YXQ4 647 aa17.31■□□□□ 0.36
CLN3-235ENST00000568497 ECM2O94769 699 aaPredicted RBP17.31■□□□□ 0.36
CLN3-235ENST00000568497 KCNJ4P48050 445 aa17.31■□□□□ 0.36
CLN3-235ENST00000568497 KIF22Q14807 665 aa17.31■□□□□ 0.36
CLN3-235ENST00000568497 OPTNQ96CV9 577 aa17.31■□□□□ 0.36
CLN3-235ENST00000568497 VEZTQ9HBM0 779 aa17.31■□□□□ 0.36
CLN3-235ENST00000568497 NR2E3Q9Y5X4 410 aa17.31■□□□□ 0.36
CLN3-235ENST00000568497 ZNF804BA4D1E1 1349 aa17.3■□□□□ 0.36
CLN3-235ENST00000568497 CLRN2A0PK11 232 aa17.3■□□□□ 0.36
CLN3-235ENST00000568497 MYO1BO43795 1136 aa17.3■□□□□ 0.36
CLN3-235ENST00000568497 GTF2IP78347 998 aa17.3■□□□□ 0.36
CLN3-235ENST00000568497 NBPF12Q5TAG4 269 aaPredicted RBP17.3■□□□□ 0.36
CLN3-235ENST00000568497 SHISA4Q96DD7 197 aa17.3■□□□□ 0.36
CLN3-235ENST00000568497 LRCH3Q96II8 777 aa17.3■□□□□ 0.36
CLN3-235ENST00000568497 RIPOR2Q9Y4F9 1068 aa17.3■□□□□ 0.36
CLN3-235ENST00000568497 ZSWIM8A7E2V4 1837 aa17.3■□□□□ 0.36
CLN3-235ENST00000568497 CCL15-CCL14A0A0B4J2E2 113 aa17.29■□□□□ 0.36
CLN3-235ENST00000568497 SOX1O00570 391 aaPredicted RBP17.29■□□□□ 0.36
CLN3-235ENST00000568497 ZBTB7BO15156 539 aaPredicted RBP17.29■□□□□ 0.36
CLN3-235ENST00000568497 WDHD1O75717 1129 aaPredicted RBP17.29■□□□□ 0.36
CLN3-235ENST00000568497 GNAI2P04899 355 aa17.29■□□□□ 0.36
CLN3-235ENST00000568497 MTFR1Q15390 333 aa17.29■□□□□ 0.36
CLN3-235ENST00000568497 CCL15Q16663 113 aa17.29■□□□□ 0.36
CLN3-235ENST00000568497 METTL24Q5JXM2 366 aa17.29■□□□□ 0.36
CLN3-235ENST00000568497 MTMR14Q8NCE2 650 aa17.29■□□□□ 0.36
CLN3-235ENST00000568497 ARHGAP39Q9C0H5 1083 aa17.29■□□□□ 0.36
CLN3-235ENST00000568497 ECM29Q5VYK3 1845 aa17.28■□□□□ 0.36
CLN3-235ENST00000568497 OTOFQ9HC10 1997 aa17.28■□□□□ 0.36
CLN3-235ENST00000568497 SRGAP3O43295 1099 aa17.28■□□□□ 0.36
CLN3-235ENST00000568497 USP2O75604 605 aaPredicted RBP17.28■□□□□ 0.36
CLN3-235ENST00000568497 GNAI3P08754 354 aa17.28■□□□□ 0.36
CLN3-235ENST00000568497 PRO3102Q9H379 93 aa17.28■□□□□ 0.36
CLN3-235ENST00000568497 IQSEC3Q9UPP2 1182 aaPredicted RBP17.28■□□□□ 0.36
CLN3-235ENST00000568497 LEMD3Q9Y2U8 911 aa17.28■□□□□ 0.36
CLN3-235ENST00000568497 IRS2Q9Y4H2 1338 aa17.27■□□□□ 0.36
CLN3-235ENST00000568497 F8W031 263 aaPredicted RBP17.27■□□□□ 0.36
CLN3-235ENST00000568497 GYG1P46976 350 aa17.27■□□□□ 0.36
CLN3-235ENST00000568497 ATG9AQ7Z3C6 839 aa17.27■□□□□ 0.36
CLN3-235ENST00000568497 NKX2-3Q8TAU0 364 aa17.27■□□□□ 0.36
CLN3-235ENST00000568497 BRI3BPQ8WY22 251 aa17.27■□□□□ 0.36
CLN3-235ENST00000568497 ANKRD2Q9GZV1 360 aa17.27■□□□□ 0.36
CLN3-235ENST00000568497 PCDHAC2Q9Y5I4 1007 aa17.27■□□□□ 0.36
CLN3-235ENST00000568497 A0A1W2PPC1 479 aa17.26■□□□□ 0.35
CLN3-235ENST00000568497 EYA2O00167 538 aa17.26■□□□□ 0.35
CLN3-235ENST00000568497 FAM43AQ8N2R8 423 aa17.26■□□□□ 0.35
CLN3-235ENST00000568497 MS4A4AQ96JQ5 239 aa17.26■□□□□ 0.35
CLN3-235ENST00000568497 BCL11AQ9H165 835 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms