RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 EFCC1Q9HA90 598 aa13.14□□□□□ -0.31
CUX1-218ENST00000560541 ZNF215Q9UL58 517 aaPredicted RBP13.14□□□□□ -0.31
CUX1-218ENST00000560541 CAMTA1Q9Y6Y1 1673 aa13.13□□□□□ -0.31
CUX1-218ENST00000560541 ZNF526Q8TF50 670 aaPredicted RBP13.13□□□□□ -0.31
CUX1-218ENST00000560541 DENND2AQ9ULE3 1009 aa13.13□□□□□ -0.31
CUX1-218ENST00000560541 PRC1O43663 620 aa13.13□□□□□ -0.31
CUX1-218ENST00000560541 DHX16O60231 1041 aaKnown RBP13.13□□□□□ -0.31
CUX1-218ENST00000560541 RXRAP19793 462 aa13.13□□□□□ -0.31
CUX1-218ENST00000560541 LINC00301Q8NCQ3 95 aa13.13□□□□□ -0.31
CUX1-218ENST00000560541 ORC3Q9UBD5 711 aaPredicted RBP13.13□□□□□ -0.31
CUX1-218ENST00000560541 FOXP2O15409 715 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 FGAP02671 866 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 TTC39AQ5SRH9 613 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 NBPF11Q86T75 865 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 KIF28PB7ZC32 967 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 CPLX1O14810 134 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 MARCKSP29966 332 aaPredicted RBP13.12□□□□□ -0.31
CUX1-218ENST00000560541 RBM6P78332 1123 aaKnown RBP13.12□□□□□ -0.31
CUX1-218ENST00000560541 ADALQ6DHV7 355 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 AIFM3Q96NN9 605 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 MYCBPQ99417 103 aaPredicted RBP13.12□□□□□ -0.31
CUX1-218ENST00000560541 NAT10Q9H0A0 1025 aaKnown RBP13.12□□□□□ -0.31
CUX1-218ENST00000560541 PUS7LQ9H0K6 701 aaKnown RBP13.12□□□□□ -0.31
CUX1-218ENST00000560541 IFNKQ9P0W0 207 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 CEP126Q9P2H0 1117 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 DDX41Q9UJV9 622 aaKnown RBP13.12□□□□□ -0.31
CUX1-218ENST00000560541 C1orf167Q5SNV9 1468 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 TRIM66O15016 1216 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 IMMTQ16891 758 aaKnown RBP13.12□□□□□ -0.31
CUX1-218ENST00000560541 TMC6Q7Z403 805 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 XPO4Q9C0E2 1151 aaKnown RBP13.12□□□□□ -0.31
CUX1-218ENST00000560541 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.12□□□□□ -0.315e-7■■□□□ 11.9
CUX1-218ENST00000560541 RTEL1Q9NZ71 1219 aa13.12□□□□□ -0.31
CUX1-218ENST00000560541 CCAR2Q8N163 923 aaKnown RBP13.11□□□□□ -0.31
CUX1-218ENST00000560541 XAGE2Q96GT9 111 aa13.11□□□□□ -0.31
CUX1-218ENST00000560541 KIAA1468Q9P260 1216 aa13.11□□□□□ -0.31
CUX1-218ENST00000560541 SPTLC2O15270 562 aa13.11□□□□□ -0.31
CUX1-218ENST00000560541 ZAP70P43403 619 aa13.11□□□□□ -0.31
CUX1-218ENST00000560541 NOP2P46087 812 aaKnown RBP13.11□□□□□ -0.31
CUX1-218ENST00000560541 PTPN21Q16825 1174 aa13.11□□□□□ -0.31
CUX1-218ENST00000560541 NYAP1Q6ZVC0 841 aa13.11□□□□□ -0.31
CUX1-218ENST00000560541 CARD10Q9BWT7 1032 aa13.11□□□□□ -0.31
CUX1-218ENST00000560541 HPS5Q9UPZ3 1129 aa13.11□□□□□ -0.31
CUX1-218ENST00000560541 TRPM3Q9HCF6 1732 aaPredicted RBP13.11□□□□□ -0.31
CUX1-218ENST00000560541 MYH15Q9Y2K3 1946 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 NEMFO60524 1076 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 CCDC57Q2TAC2 916 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 DNAJC21Q5F1R6 531 aaKnown RBP13.1□□□□□ -0.31
CUX1-218ENST00000560541 CCDC158Q5M9N0 1113 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 MYSM1Q5VVJ2 828 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 ATL3Q6DD88 541 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 NKX2-3Q8TAU0 364 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 DRC1Q96MC2 740 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 LMOD1P29536 600 aaPredicted RBP13.1□□□□□ -0.31
CUX1-218ENST00000560541 ANTXR2P58335 489 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 SYNE3Q6ZMZ3 975 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 RALYLQ86SE5 291 aaKnown RBP13.1□□□□□ -0.31
CUX1-218ENST00000560541 KRT222Q8N1A0 295 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 FBXO18Q8NFZ0 1043 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 GPR108Q9NPR9 543 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 ZNF202O95125 648 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 SLC3A2P08195 630 aaKnown RBP13.1□□□□□ -0.31
CUX1-218ENST00000560541 SART3Q15020 963 aaKnown RBP13.1□□□□□ -0.31
CUX1-218ENST00000560541 ELF2Q15723 593 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 FAM89AQ96GI7 184 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 C19orf44Q9H6X5 657 aa13.1□□□□□ -0.31
CUX1-218ENST00000560541 NEDD4P46934 1319 aa13.09□□□□□ -0.31
CUX1-218ENST00000560541 RASSF4Q9H2L5 321 aa13.09□□□□□ -0.31
CUX1-218ENST00000560541 ARMCX5Q6P1M9 558 aa13.09□□□□□ -0.31
CUX1-218ENST00000560541 SYNE4Q8N205 404 aa13.09□□□□□ -0.31
CUX1-218ENST00000560541 KCNG4Q8TDN1 519 aa13.09□□□□□ -0.31
CUX1-218ENST00000560541 MROH7-TTC4A0A0A0MT08 1334 aa13.08□□□□□ -0.31
CUX1-218ENST00000560541 GPAA1O43292 621 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 ATP1A3P13637 1013 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 PFKFB1P16118 471 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 ATF3P18847 181 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 MB21D2Q8IYB1 491 aaPredicted RBP13.08□□□□□ -0.32
CUX1-218ENST00000560541 CCDC191Q8NCU4 936 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 A0A1W2PQ27 194 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 A0A1W2PQ64 194 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 A0A1W2PQD8 194 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 ZNF213O14771 459 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 WDHD1O75717 1129 aaPredicted RBP13.08□□□□□ -0.32
CUX1-218ENST00000560541 KMT5BQ4FZB7 885 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 E4F1Q66K89 784 aaPredicted RBP13.08□□□□□ -0.32
CUX1-218ENST00000560541 KIF18AQ8NI77 898 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 NCAPGQ9BPX3 1015 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 LMTK3Q96Q04 1460 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 KIF23Q02241 960 aaPredicted RBP13.08□□□□□ -0.32
CUX1-218ENST00000560541 ANO1Q5XXA6 986 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 NCOA7Q8NI08 942 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 PHKBQ93100 1093 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 FAM212AQ96EL1 285 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 POLR3EQ9NVU0 708 aa13.08□□□□□ -0.32
CUX1-218ENST00000560541 SENP2Q9HC62 589 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 UBE2Q2LH0YL09 131 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 SFPQP23246 707 aaKnown RBP eCLIP13.07□□□□□ -0.322e-6■■□□□ 12.7
CUX1-218ENST00000560541 GSDMDP57764 484 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 GOLGA8FQ08AF8 430 aa13.07□□□□□ -0.32
CUX1-218ENST00000560541 GOLGA8DPQ0D2H9 430 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms