RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 NCOA5Q9HCD5 579 aaKnown RBP18.89■□□□□ 0.61
SHMT2-232ENST00000557487 FBXO3Q9UK99 471 aa18.89■□□□□ 0.61
SHMT2-232ENST00000557487 MYSM1Q5VVJ2 828 aa18.88■□□□□ 0.61
SHMT2-232ENST00000557487 E4F1Q66K89 784 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-232ENST00000557487 SYNE3Q6ZMZ3 975 aa18.88■□□□□ 0.61
SHMT2-232ENST00000557487 PPP1R13BQ96KQ4 1090 aa18.88■□□□□ 0.61
SHMT2-232ENST00000557487 SRRTQ9BXP5 876 aaKnown RBP18.88■□□□□ 0.61
SHMT2-232ENST00000557487 TRMT1Q9NXH9 659 aaKnown RBP18.88■□□□□ 0.61
SHMT2-232ENST00000557487 NAP1L2Q9ULW6 460 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-232ENST00000557487 A0A1B0GVL5 298 aa18.88■□□□□ 0.61
SHMT2-232ENST00000557487 EYA2O00167 538 aa18.88■□□□□ 0.61
SHMT2-232ENST00000557487 SMC2O95347 1197 aa18.88■□□□□ 0.61
SHMT2-232ENST00000557487 FOSBP53539 338 aa18.88■□□□□ 0.61
SHMT2-232ENST00000557487 NAA30Q147X3 362 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-232ENST00000557487 XPO4Q9C0E2 1151 aaKnown RBP18.88■□□□□ 0.61
SHMT2-232ENST00000557487 CWC25Q9NXE8 425 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-232ENST00000557487 CHGBP05060 677 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 SLFN14P0C7P3 912 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 BMS1Q14692 1282 aaKnown RBP18.87■□□□□ 0.61
SHMT2-232ENST00000557487 DPCR1Q3MIW9 517 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 CCDC93Q567U6 631 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 TMC6Q7Z403 805 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 FCHSD1Q86WN1 690 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 IFNKQ9P0W0 207 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 NEDD4P46934 1319 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 PHLPP2Q6ZVD8 1323 aa18.87■□□□□ 0.61
SHMT2-232ENST00000557487 ZNF202O95125 648 aa18.86■□□□□ 0.61
SHMT2-232ENST00000557487 GUCY1B3Q02153 619 aa18.86■□□□□ 0.61
SHMT2-232ENST00000557487 TERF2Q15554 542 aa18.86■□□□□ 0.61
SHMT2-232ENST00000557487 ELF2Q15723 593 aa18.86■□□□□ 0.61
SHMT2-232ENST00000557487 FBXO38Q6PIJ6 1188 aa18.86■□□□□ 0.61
SHMT2-232ENST00000557487 JMYQ8N9B5 988 aa18.86■□□□□ 0.61
SHMT2-232ENST00000557487 H2AFXP16104 143 aaPredicted RBP18.86■□□□□ 0.61
SHMT2-232ENST00000557487 ANO1Q5XXA6 986 aa18.86■□□□□ 0.61
SHMT2-232ENST00000557487 ARMCX5Q6P1M9 558 aa18.86■□□□□ 0.61
SHMT2-232ENST00000557487 ORC3Q9UBD5 711 aaPredicted RBP18.86■□□□□ 0.61
SHMT2-232ENST00000557487 ATP5J2-PTCD1G3V325 749 aa18.85■□□□□ 0.61
SHMT2-232ENST00000557487 PTCD1O75127 700 aaKnown RBP18.85■□□□□ 0.61
SHMT2-232ENST00000557487 TPM1P09493 284 aa18.85■□□□□ 0.61
SHMT2-232ENST00000557487 AKAP2Q9Y2D5 859 aa18.85■□□□□ 0.61
SHMT2-232ENST00000557487 CLIC4Q9Y696 253 aa18.85■□□□□ 0.61
SHMT2-232ENST00000557487 COL18A1P39060 1754 aa18.85■□□□□ 0.61
SHMT2-232ENST00000557487 FAM237AA0A1B0GTK4 181 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 CCDC66A2RUB6 948 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 CPLX1O14810 134 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 NCAPHQ15003 741 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 MB21D2Q8IYB1 491 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-232ENST00000557487 CCDC191Q8NCU4 936 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 NCOA7Q8NI08 942 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 NLRP2Q9NX02 1062 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 TUBE1Q9UJT0 475 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 PARP4Q9UKK3 1724 aaKnown RBP18.84■□□□□ 0.61
SHMT2-232ENST00000557487 GLI3P10071 1580 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 RGPD5Q99666 1765 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 PKD1L3Q7Z443 1732 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 ONECUT3O60422 494 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-232ENST00000557487 PPP6R2O75170 966 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 SLC39A14Q15043 492 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 CCDC158Q5M9N0 1113 aa18.84■□□□□ 0.61
SHMT2-232ENST00000557487 AXDND1Q5T1B0 1012 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-232ENST00000557487 ELOA2Q8IYF1 753 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-232ENST00000557487 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.84■□□□□ 0.61
SHMT2-232ENST00000557487 SPATA31A5Q5VU36 1347 aa18.83■□□□□ 0.61
SHMT2-232ENST00000557487 SPATA31A7Q8IWB4 1347 aa18.83■□□□□ 0.61
SHMT2-232ENST00000557487 MEGF6O75095 1541 aa18.83■□□□□ 0.61
SHMT2-232ENST00000557487 COL5A2P05997 1499 aaPredicted RBP18.83■□□□□ 0.61
SHMT2-232ENST00000557487 A0A1B0GUL7 405 aa18.83■□□□□ 0.6
SHMT2-232ENST00000557487 GOLGA8BA8MQT2 603 aa18.83■□□□□ 0.6
SHMT2-232ENST00000557487 M0R2C6 588 aa18.83■□□□□ 0.6
SHMT2-232ENST00000557487 PRC1O43663 620 aa18.83■□□□□ 0.6
SHMT2-232ENST00000557487 CDKL5O76039 1030 aa18.83■□□□□ 0.6
SHMT2-232ENST00000557487 TIMM10P62072 90 aa18.83■□□□□ 0.6
SHMT2-232ENST00000557487 ETF1P62495 437 aaKnown RBP18.83■□□□□ 0.6
SHMT2-232ENST00000557487 FANCCQ00597 558 aa18.83■□□□□ 0.6
SHMT2-232ENST00000557487 KIF23Q02241 960 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-232ENST00000557487 ARGLU1Q9NWB6 273 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-232ENST00000557487 KLF18A0A0U1RQI7 1052 aa18.82■□□□□ 0.6
SHMT2-232ENST00000557487 PFKFB1P16118 471 aa18.82■□□□□ 0.6
SHMT2-232ENST00000557487 EVA1CP58658 441 aa18.82■□□□□ 0.6
SHMT2-232ENST00000557487 RALYLQ86SE5 291 aaKnown RBP18.82■□□□□ 0.6
SHMT2-232ENST00000557487 CEP126Q9P2H0 1117 aa18.82■□□□□ 0.6
SHMT2-232ENST00000557487 DDX60Q8IY21 1712 aaKnown RBP18.82■□□□□ 0.6
SHMT2-232ENST00000557487 APPBP2Q92624 585 aa18.82■□□□□ 0.6
SHMT2-232ENST00000557487 OSBP2Q969R2 916 aa18.82■□□□□ 0.6
SHMT2-232ENST00000557487 HPS5Q9UPZ3 1129 aa18.82■□□□□ 0.6
SHMT2-232ENST00000557487 GOLGA6L9A6NEM1 432 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 ATP8B1O43520 1251 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 CABP4P57796 275 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 MYL5Q02045 173 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 SYT10Q6XYQ8 523 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 TMX1Q9H3N1 280 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 STRN4Q9NRL3 753 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 HPSEQ9Y251 543 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 NUP188Q5SRE5 1749 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 SPATA31A1Q5TZJ5 1347 aa18.81■□□□□ 0.6
SHMT2-232ENST00000557487 A0A087WWV3 80 aa18.8■□□□□ 0.6
SHMT2-232ENST00000557487 ZSCAN12O43309 604 aa18.8■□□□□ 0.6
SHMT2-232ENST00000557487 POLR3DP05423 398 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-232ENST00000557487 SYKP43405 635 aa18.8■□□□□ 0.6
SHMT2-232ENST00000557487 TJP1Q07157 1748 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms