RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 NIP7Q9Y221 180 aaKnown RBP eCLIP16.33■□□□□ 0.2
MSH2-206ENST00000543555 RTL9Q8NET4 1388 aa16.33■□□□□ 0.2
MSH2-206ENST00000543555 DDX60Q8IY21 1712 aaKnown RBP16.32■□□□□ 0.2
MSH2-206ENST00000543555 KLF18A0A0U1RQI7 1052 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 FAM196AQ6ZSG2 479 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 SPATA5Q8NB90 893 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 NBPF3Q9H094 633 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 ZKSCAN5Q9Y2L8 839 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 FDPSP14324 419 aaKnown RBP16.32■□□□□ 0.2
MSH2-206ENST00000543555 PPFIA3O75145 1194 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 CAMK4Q16566 473 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 BICD2Q8TD16 824 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 SMARCC1Q92922 1105 aaPredicted RBP16.32■□□□□ 0.2
MSH2-206ENST00000543555 TNMDQ9H2S6 317 aa16.32■□□□□ 0.2
MSH2-206ENST00000543555 MYH14Q7Z406 1995 aaKnown RBP16.32■□□□□ 0.2
MSH2-206ENST00000543555 GOLGA8BA8MQT2 603 aa16.31■□□□□ 0.2
MSH2-206ENST00000543555 SNAP23O00161 211 aa16.31■□□□□ 0.2
MSH2-206ENST00000543555 RASGRF1Q13972 1273 aa16.31■□□□□ 0.2
MSH2-206ENST00000543555 HPS5Q9UPZ3 1129 aa16.31■□□□□ 0.2
MSH2-206ENST00000543555 MYO5AQ9Y4I1 1855 aaKnown RBP16.31■□□□□ 0.2
MSH2-206ENST00000543555 DHX16O60231 1041 aaKnown RBP16.31■□□□□ 0.2
MSH2-206ENST00000543555 APBA3O96018 575 aa16.31■□□□□ 0.2
MSH2-206ENST00000543555 APPP05067 770 aa16.31■□□□□ 0.2
MSH2-206ENST00000543555 TRDNQ13061 729 aa16.31■□□□□ 0.2
MSH2-206ENST00000543555 CLSTN2Q9H4D0 955 aa16.31■□□□□ 0.2
MSH2-206ENST00000543555 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.31■□□□□ 0.2
MSH2-206ENST00000543555 KDM4AO75164 1064 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 IGHMBP2P38935 993 aaKnown RBP16.3■□□□□ 0.2
MSH2-206ENST00000543555 ATL3Q6DD88 541 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 TBC1D10CQ8IV04 446 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 STRBPQ96SI9 672 aaKnown RBP16.3■□□□□ 0.2
MSH2-206ENST00000543555 RCOR1Q9UKL0 485 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 LAMB2P55268 1798 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 NR1I2O75469 434 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 GUCY1B3Q02153 619 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 RBM43Q6ZSC3 357 aaKnown RBP16.3■□□□□ 0.2
MSH2-206ENST00000543555 AIDAQ96BJ3 306 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 MYH15Q9Y2K3 1946 aa16.3■□□□□ 0.2
MSH2-206ENST00000543555 ZNF500O60304 480 aaPredicted RBP16.29■□□□□ 0.2
MSH2-206ENST00000543555 PTMAP06454 111 aaKnown RBP16.29■□□□□ 0.2
MSH2-206ENST00000543555 ZNF652Q9Y2D9 606 aa16.29■□□□□ 0.2
MSH2-206ENST00000543555 ADCY5O95622 1261 aa16.29■□□□□ 0.2
MSH2-206ENST00000543555 CEBPZQ03701 1054 aaKnown RBP16.29■□□□□ 0.2
MSH2-206ENST00000543555 TYRO3Q06418 890 aa16.29■□□□□ 0.2
MSH2-206ENST00000543555 MAP3K12Q12852 859 aa16.29■□□□□ 0.2
MSH2-206ENST00000543555 ZNF396Q96N95 335 aaPredicted RBP16.29■□□□□ 0.2
MSH2-206ENST00000543555 BCL11BQ9C0K0 894 aaPredicted RBP16.29■□□□□ 0.2
MSH2-206ENST00000543555 NAP1L5Q96NT1 182 aaPredicted RBP16.29■□□□□ 0.2
MSH2-206ENST00000543555 USP28Q96RU2 1077 aa16.29■□□□□ 0.2
MSH2-206ENST00000543555 FTOQ9C0B1 505 aaKnown RBP eCLIP16.29■□□□□ 0.2
MSH2-206ENST00000543555 DENND2AQ9ULE3 1009 aa16.29■□□□□ 0.2
MSH2-206ENST00000543555 DOCK2Q92608 1830 aa16.28■□□□□ 0.2
MSH2-206ENST00000543555 ALX1Q15699 326 aa16.28■□□□□ 0.2
MSH2-206ENST00000543555 MAGEB6Q8N7X4 407 aa16.28■□□□□ 0.2
MSH2-206ENST00000543555 MRVI1Q9Y6F6 885 aa16.28■□□□□ 0.2
MSH2-206ENST00000543555 COL5A3P25940 1745 aaPredicted RBP16.28■□□□□ 0.2
MSH2-206ENST00000543555 ZMYM6O95789 1325 aa16.28■□□□□ 0.2
MSH2-206ENST00000543555 GNPATO15228 680 aa16.28■□□□□ 0.2
MSH2-206ENST00000543555 BICDL1Q6ZP65 573 aa16.28■□□□□ 0.2
MSH2-206ENST00000543555 CKAP2LQ8IYA6 745 aa16.28■□□□□ 0.2
MSH2-206ENST00000543555 ANGEL1Q9UNK9 670 aaKnown RBP16.28■□□□□ 0.2
MSH2-206ENST00000543555 CYB5R4Q7L1T6 521 aa16.27■□□□□ 0.2
MSH2-206ENST00000543555 PROM2Q8N271 834 aa16.27■□□□□ 0.2
MSH2-206ENST00000543555 FAM200AQ8TCP9 573 aa16.27■□□□□ 0.2
MSH2-206ENST00000543555 ORC3Q9UBD5 711 aaPredicted RBP16.27■□□□□ 0.2
MSH2-206ENST00000543555 BCORQ6W2J9 1755 aa16.27■□□□□ 0.2
MSH2-206ENST00000543555 CPLX1O14810 134 aa16.27■□□□□ 0.2
MSH2-206ENST00000543555 CHRNDQ07001 517 aa16.27■□□□□ 0.2
MSH2-206ENST00000543555 RAB11FIP4Q86YS3 637 aa16.27■□□□□ 0.2
MSH2-206ENST00000543555 NKX2-3Q8TAU0 364 aa16.27■□□□□ 0.2
MSH2-206ENST00000543555 PATL2C9JE40 543 aaKnown RBP16.27■□□□□ 0.19
MSH2-206ENST00000543555 SH2B2O14492 632 aaPredicted RBP16.27■□□□□ 0.19
MSH2-206ENST00000543555 MBD4O95243 580 aa16.27■□□□□ 0.19
MSH2-206ENST00000543555 BCAMP50895 628 aa16.27■□□□□ 0.19
MSH2-206ENST00000543555 CLEC4GQ6UXB4 293 aa16.27■□□□□ 0.19
MSH2-206ENST00000543555 C8orf76Q96K31 380 aa16.27■□□□□ 0.19
MSH2-206ENST00000543555 EPB41L4AQ9HCS5 686 aaPredicted RBP16.27■□□□□ 0.19
MSH2-206ENST00000543555 B4E1Z4 1266 aa16.26■□□□□ 0.19
MSH2-206ENST00000543555 IFNL3Q8IZI9 196 aa16.26■□□□□ 0.19
MSH2-206ENST00000543555 SRP68Q9UHB9 627 aaKnown RBP16.26■□□□□ 0.19
MSH2-206ENST00000543555 NEDD4P46934 1319 aa16.26■□□□□ 0.19
MSH2-206ENST00000543555 ZNF831Q5JPB2 1677 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 CCDC24Q8N4L8 307 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 FBXO18Q8NFZ0 1043 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 TMEM87BQ96K49 555 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 CDC5LQ99459 802 aaKnown RBP16.25■□□□□ 0.19
MSH2-206ENST00000543555 NAPBQ9H115 298 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 ANO8Q9HCE9 1232 aaPredicted RBP16.25■□□□□ 0.19
MSH2-206ENST00000543555 BTAF1O14981 1849 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 OFD1O75665 1012 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 OTUD7BQ6GQQ9 843 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 CCAR1Q8IX12 1150 aaKnown RBP16.25■□□□□ 0.19
MSH2-206ENST00000543555 ARMT1Q9H993 441 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.25■□□□□ 0.19
MSH2-206ENST00000543555 C4AP0C0L4 1744 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 C4BP0C0L5 1744 aa16.25■□□□□ 0.19
MSH2-206ENST00000543555 AP5Z1O43299 807 aa16.24■□□□□ 0.19
MSH2-206ENST00000543555 EN1Q05925 392 aaPredicted RBP16.24■□□□□ 0.19
MSH2-206ENST00000543555 DEFB132Q7Z7B7 95 aa16.24■□□□□ 0.19
MSH2-206ENST00000543555 COL4A1P02462 1669 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms