RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 KAT6BQ8WYB5 2073 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 A0A0D9SFI3 127 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 NAA30Q147X3 362 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 CTR9Q6PD62 1173 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 SNX14Q9Y5W7 946 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 SBF2Q86WG5 1849 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 GADD45BO75293 160 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 SLFN14P0C7P3 912 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 LRCH2Q5VUJ6 765 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 RASEFQ8IZ41 740 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 PROCA1Q8NCQ7 364 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 GREM2Q9H772 168 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 SPTLC3Q9NUV7 552 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 CALCOCO1Q9P1Z2 691 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 NDUFB9Q9Y6M9 179 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 ARAP2Q8WZ64 1704 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 HIP1O00291 1037 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 HSPA1LP34931 641 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 GABPB1Q06547 395 aaPredicted RBP9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 CCDC57Q2TAC2 916 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 RUFY2Q8WXA3 655 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 FAM117AQ9C073 453 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 BRMS1Q9HCU9 246 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 KLHL33A6NCF5 533 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 IRS4O14654 1257 aaPredicted RBP9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 COQ9O75208 318 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 CALRP27797 417 aaKnown RBP9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 TIMM10P62072 90 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 NCBP1Q09161 790 aaKnown RBP9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 SUSD4Q5VX71 490 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 ICE2Q659A1 982 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 MNS1Q8NEH6 495 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 MED4Q9NPJ6 270 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 TRMT112Q9UI30 125 aaKnown RBP9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 COL4A1P02462 1669 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 CCDC171Q6TFL3 1326 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 CASZ1Q86V15 1759 aa9.32□□□□□ -0.92
PDLIM5-221ENST00000542407 A0A1B0GUL7 405 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 PPP1R12AO14974 1030 aaPredicted RBP9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 ITGA6P23229 1130 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 NEK4P51957 841 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 VGLL2Q8N8G2 317 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 FSD1Q9BTV5 496 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 CNTNAP4Q9C0A0 1308 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 TAF1LQ8IZX4 1826 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 A0A0G2JS52 829 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 PDE8AO60658 829 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 CHGBP05060 677 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 GUCY2CP25092 1073 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 IFIT5Q13325 482 aaKnown RBP9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 NECTIN1Q15223 517 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 ZNF589Q86UQ0 364 aaPredicted RBP9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 MAP4K1Q92918 833 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 AK7Q96M32 723 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 C16orf45Q96MC5 204 aaPredicted RBP9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 TTC14Q96N46 770 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 CCDC85AQ96PX6 553 aaPredicted RBP9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 CTNNA3Q9UI47 895 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 SUFUQ9UMX1 484 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 COL24A1Q17RW2 1714 aa9.31□□□□□ -0.92
PDLIM5-221ENST00000542407 ONECUT3O60422 494 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 NTSR2O95665 410 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 KIAA1524Q8TCG1 905 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 NOL10Q9BSC4 688 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 RSPH14Q9UHP6 348 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 TERF2Q15554 542 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 FAM184AQ8NB25 1140 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 GJD4Q96KN9 370 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 SOCS7O14512 581 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 ADORA1P30542 326 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 IRF5Q13568 498 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 CUL4AQ13619 759 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 TMX3Q96JJ7 454 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 UPF3BQ9BZI7 483 aaKnown RBP9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 CEP126Q9P2H0 1117 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 SMC3Q9UQE7 1217 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 AFF2P51816 1311 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 ABCC12Q96J65 1359 aa9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 RPAP1Q9BWH6 1393 aaPredicted RBP9.3□□□□□ -0.92
PDLIM5-221ENST00000542407 CTIFO43310 598 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 RBM5P52756 815 aaKnown RBP eCLIP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 KCNQ4P56696 695 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 UVSSAQ2YD98 709 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 USP48Q86UV5 1035 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 KBTBD3Q8NAB2 608 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 NEUROD6Q96NK8 337 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 DDX41Q9UJV9 622 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 RTL9Q8NET4 1388 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 A0A1B0GUL6 1792 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 SH3TC1Q8TE82 1336 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 TAF5LO75529 589 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 MCM2P49736 904 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 ZRSR2Q15696 482 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 PARP10Q53GL7 1025 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 GET4Q7L5D6 327 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 APBB1IPQ7Z5R6 666 aaPredicted RBP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 XAGE2Q96GT9 111 aa9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 UTP14AQ9BVJ6 771 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-221ENST00000542407 KCNF1Q9H3M0 494 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms