RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 MFSD10Q14728 455 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 RABL6Q3YEC7 729 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-233ENST00000535896 FAM182BQ5T319 152 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 GIMAP6Q6P9H5 292 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 LEO1Q8WVC0 666 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-233ENST00000535896 ANKRD7Q92527 254 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 MRFAP1L1Q96HT8 127 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 AGXT2Q9BYV1 514 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 TTC12Q9H892 705 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-233ENST00000535896 GPR108Q9NPR9 543 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 EMILIN3Q9NT22 766 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 ITGB4P16144 1822 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 SASH1O94885 1247 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 TRIM37O94972 964 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 MAP4K4O95819 1239 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-233ENST00000535896 KCNJ6P48051 423 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 ZNF75DP51815 510 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 TOB2Q14106 344 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-233ENST00000535896 MPRIPQ6WCQ1 1025 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 CDC37L1Q7L3B6 337 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 SMARCC2Q8TAQ2 1214 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 EAF2Q96CJ1 260 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-233ENST00000535896 SUCLG2Q96I99 432 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 GTPBP4Q9BZE4 634 aaKnown RBP7.43□□□□□ -1.22
SYNE1-233ENST00000535896 KCNF1Q9H3M0 494 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 BICC1Q9H694 974 aaKnown RBP7.43□□□□□ -1.22
SYNE1-233ENST00000535896 LGR6Q9HBX8 967 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 TMOD3Q9NYL9 352 aa7.43□□□□□ -1.22
SYNE1-233ENST00000535896 BTAF1O14981 1849 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 A0A0D9SFI3 127 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 NEURL1BA8MQ27 555 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 SOCS7O14512 581 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 PFKFB2O60825 505 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 TAF5LO75529 589 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 HMGB2P26583 209 aaKnown RBP7.42□□□□□ -1.22
SYNE1-233ENST00000535896 BAG6P46379 1132 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 CABP4P57796 275 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 FAM193AP78312 1265 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 RBM10P98175 930 aaKnown RBP7.42□□□□□ -1.22
SYNE1-233ENST00000535896 RESTQ13127 1097 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 STX1AQ16623 288 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 LRRFIP1Q32MZ4 808 aaKnown RBP7.42□□□□□ -1.22
SYNE1-233ENST00000535896 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.42□□□□□ -1.22
SYNE1-233ENST00000535896 SMARCC1Q92922 1105 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-233ENST00000535896 SYTL4Q96C24 671 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-233ENST00000535896 ACSBG1Q96GR2 724 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 KAZALD1Q96I82 304 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 NEK1Q96PY6 1258 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 METTL22Q9BUU2 404 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-233ENST00000535896 DSCC1Q9BVC3 393 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 DACT1Q9NYF0 836 aa7.42□□□□□ -1.22
SYNE1-233ENST00000535896 SEPT9Q9UHD8 586 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-233ENST00000535896 ZNF609O15014 1411 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 PLSCR1O15162 318 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 KCNQ2O43526 872 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 KIF20AO95235 890 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 ZNF165P49910 485 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 GSDMDP57764 484 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 GCKRQ14397 625 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 PDIA6Q15084 440 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 FOXD4L6Q3SYB3 417 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-233ENST00000535896 MCMDC2Q4G0Z9 681 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 ANO6Q4KMQ2 910 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 FOXD4L3Q6VB84 417 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-233ENST00000535896 CREBRFQ8IUR6 639 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 FAM227BQ96M60 508 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 ZNF396Q96N95 335 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-233ENST00000535896 HAUS7Q99871 368 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 BPIFA3Q9BQP9 254 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 NAT10Q9H0A0 1025 aaKnown RBP7.41□□□□□ -1.22
SYNE1-233ENST00000535896 SLC52A2Q9HAB3 445 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 CBX8Q9HC52 389 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 HELLSQ9NRZ9 838 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 CGNQ9P2M7 1197 aaKnown RBP7.41□□□□□ -1.22
SYNE1-233ENST00000535896 IMPACTQ9P2X3 320 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 WDR19Q8NEZ3 1342 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 SALL1Q9NSC2 1324 aa7.41□□□□□ -1.22
SYNE1-233ENST00000535896 C4AP0C0L4 1744 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 C4BP0C0L5 1744 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 A0A1W2PQ27 194 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 A0A1W2PQ64 194 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 A0A1W2PQD8 194 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 GOLGA6L19H0YKK7 550 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 H3BQV1 296 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 MYO1BO43795 1136 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 APBA3O96018 575 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 IGKV5-2P06315 115 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 CPA1P15085 419 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 LIG1P18858 919 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 EVCP57679 992 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 DMTNQ08495 405 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 CWF19L2Q2TBE0 894 aaKnown RBP7.4□□□□□ -1.22
SYNE1-233ENST00000535896 SLFNL1Q499Z3 407 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 TNNI3KQ59H18 835 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 ZSCAN25Q6NSZ9 544 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 ZNF790Q6PG37 636 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 HOMEZQ8IX15 550 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 KBTBD3Q8NAB2 608 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 BICD2Q8TD16 824 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 PIGBQ92521 554 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms