RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ZBTB1Q9Y2K1 713 aa24.76■■□□□ 1.55
VPS28-205ENST00000526204 STK38Q15208 465 aa24.75■■□□□ 1.55
VPS28-205ENST00000526204 SF3A1Q15459 793 aaKnown RBP24.75■■□□□ 1.55
VPS28-205ENST00000526204 CCDC102BQ68D86 513 aa24.75■■□□□ 1.55
VPS28-205ENST00000526204 LPIN2Q92539 896 aa24.75■■□□□ 1.55
VPS28-205ENST00000526204 NHSL1Q5SYE7 1610 aa24.75■■□□□ 1.55
VPS28-205ENST00000526204 MROH5Q6ZUA9 1318 aa24.75■■□□□ 1.55
VPS28-205ENST00000526204 IDH1O75874 414 aaKnown RBP24.74■■□□□ 1.55
VPS28-205ENST00000526204 PUM3Q15397 648 aaKnown RBP24.74■■□□□ 1.55
VPS28-205ENST00000526204 PIH1D3Q9NQM4 214 aaKnown RBP24.74■■□□□ 1.55
VPS28-205ENST00000526204 CLIP2Q9UDT6 1046 aa24.74■■□□□ 1.55
VPS28-205ENST00000526204 CDKL5O76039 1030 aa24.74■■□□□ 1.55
VPS28-205ENST00000526204 CHAF1AQ13111 956 aaPredicted RBP24.74■■□□□ 1.55
VPS28-205ENST00000526204 C11orf57Q6ZUT1 292 aaPredicted RBP24.74■■□□□ 1.55
VPS28-205ENST00000526204 DZIP3Q86Y13 1208 aaKnown RBP24.74■■□□□ 1.55
VPS28-205ENST00000526204 UBE2Q2Q8WVN8 375 aa24.74■■□□□ 1.55
VPS28-205ENST00000526204 NAT10Q9H0A0 1025 aaKnown RBP24.74■■□□□ 1.55
VPS28-205ENST00000526204 ZMYM6O95789 1325 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 BECN2A8MW95 431 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 MYSM1Q5VVJ2 828 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 SYNE3Q6ZMZ3 975 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 MRFAP1L1Q96HT8 127 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 ZNF532Q9HCE3 1301 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 ITGB4P16144 1822 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 EXOC5O00471 708 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 APPP05067 770 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 PDE6AP16499 860 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 CEP57L1Q8IYX8 460 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 ZNF34Q8IZ26 560 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 NBPF3Q9H094 633 aa24.73■■□□□ 1.55
VPS28-205ENST00000526204 MYH7P12883 1935 aa24.72■■□□□ 1.55
VPS28-205ENST00000526204 SPTLC2O15270 562 aa24.72■■□□□ 1.55
VPS28-205ENST00000526204 POLR3DP05423 398 aaPredicted RBP24.72■■□□□ 1.55
VPS28-205ENST00000526204 OTUD7BQ6GQQ9 843 aa24.72■■□□□ 1.55
VPS28-205ENST00000526204 CPLX2Q6PUV4 134 aaKnown RBP24.72■■□□□ 1.55
VPS28-205ENST00000526204 TMEM87BQ96K49 555 aa24.72■■□□□ 1.55
VPS28-205ENST00000526204 SDF4Q9BRK5 362 aa24.72■■□□□ 1.55
VPS28-205ENST00000526204 AKAP11Q9UKA4 1901 aa24.71■■□□□ 1.55
VPS28-205ENST00000526204 PHKA1P46020 1223 aa24.71■■□□□ 1.55
VPS28-205ENST00000526204 ALX1Q15699 326 aa24.71■■□□□ 1.55
VPS28-205ENST00000526204 CLIC4Q9Y696 253 aa24.71■■□□□ 1.55
VPS28-205ENST00000526204 ANKRD36CQ5JPF3 1778 aa24.71■■□□□ 1.55
VPS28-205ENST00000526204 FGFR2P21802 821 aa24.71■■□□□ 1.55
VPS28-205ENST00000526204 TBC1D10CQ8IV04 446 aa24.71■■□□□ 1.55
VPS28-205ENST00000526204 TCRBV5S4A2TA0A5A2 114 aa24.7■■□□□ 1.54
VPS28-205ENST00000526204 SH2B2O14492 632 aaPredicted RBP24.7■■□□□ 1.54
VPS28-205ENST00000526204 METAP2P50579 478 aaKnown RBP eCLIP24.7■■□□□ 1.54
VPS28-205ENST00000526204 KIF23Q02241 960 aaPredicted RBP24.7■■□□□ 1.54
VPS28-205ENST00000526204 NRBP1Q9UHY1 535 aa24.7■■□□□ 1.54
VPS28-205ENST00000526204 DDX60Q8IY21 1712 aaKnown RBP24.7■■□□□ 1.54
VPS28-205ENST00000526204 AIDAQ96BJ3 306 aa24.7■■□□□ 1.54
VPS28-205ENST00000526204 STRBPQ96SI9 672 aaKnown RBP24.7■■□□□ 1.54
VPS28-205ENST00000526204 UBN2Q6ZU65 1347 aa24.69■■□□□ 1.54
VPS28-205ENST00000526204 NEMFO60524 1076 aa24.69■■□□□ 1.54
VPS28-205ENST00000526204 SLC5A1P13866 664 aa24.69■■□□□ 1.54
VPS28-205ENST00000526204 NDUFA8P51970 172 aa24.69■■□□□ 1.54
VPS28-205ENST00000526204 SYTL4Q96C24 671 aaPredicted RBP24.69■■□□□ 1.54
VPS28-205ENST00000526204 MYH3P11055 1940 aa24.69■■□□□ 1.54
VPS28-205ENST00000526204 A0A1B0GVL5 298 aa24.68■■□□□ 1.54
VPS28-205ENST00000526204 ANO1Q5XXA6 986 aa24.68■■□□□ 1.54
VPS28-205ENST00000526204 CYB5R4Q7L1T6 521 aa24.68■■□□□ 1.54
VPS28-205ENST00000526204 DHX40Q8IX18 779 aaKnown RBP24.68■■□□□ 1.54
VPS28-205ENST00000526204 ZRSR1Q15695 479 aaKnown RBP24.68■■□□□ 1.54
VPS28-205ENST00000526204 APOA5Q6Q788 366 aa24.68■■□□□ 1.54
VPS28-205ENST00000526204 SPATA5Q8NB90 893 aa24.68■■□□□ 1.54
VPS28-205ENST00000526204 MAP3K12Q12852 859 aa24.67■■□□□ 1.54
VPS28-205ENST00000526204 RAB11FIP4Q86YS3 637 aa24.67■■□□□ 1.54
VPS28-205ENST00000526204 KIAA1468Q9P260 1216 aa24.67■■□□□ 1.54
VPS28-205ENST00000526204 WWC3Q9ULE0 1092 aa24.67■■□□□ 1.54
VPS28-205ENST00000526204 LRP5O75197 1615 aa24.67■■□□□ 1.54
VPS28-205ENST00000526204 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.67■■□□□ 1.54
VPS28-205ENST00000526204 PATL2C9JE40 543 aaKnown RBP24.67■■□□□ 1.54
VPS28-205ENST00000526204 LRMPQ12912 555 aa24.67■■□□□ 1.54
VPS28-205ENST00000526204 ALG1Q9BT22 464 aa24.67■■□□□ 1.54
VPS28-205ENST00000526204 COL14A1Q05707 1796 aaKnown RBP24.66■■□□□ 1.54
VPS28-205ENST00000526204 CMA1P23946 247 aa24.66■■□□□ 1.54
VPS28-205ENST00000526204 SGMS1Q86VZ5 419 aa24.66■■□□□ 1.54
VPS28-205ENST00000526204 BPIFA3Q9BQP9 254 aa24.66■■□□□ 1.54
VPS28-205ENST00000526204 KIF28PB7ZC32 967 aa24.65■■□□□ 1.54
VPS28-205ENST00000526204 IGDCC4Q8TDY8 1250 aa24.65■■□□□ 1.54
VPS28-205ENST00000526204 B4E1Z4 1266 aa24.65■■□□□ 1.54
VPS28-205ENST00000526204 ZBTB43O43298 467 aa24.65■■□□□ 1.54
VPS28-205ENST00000526204 SLC39A14Q15043 492 aa24.65■■□□□ 1.54
VPS28-205ENST00000526204 MPHOSPH8Q99549 860 aa24.65■■□□□ 1.54
VPS28-205ENST00000526204 CNNM2Q9H8M5 875 aa24.65■■□□□ 1.54
VPS28-205ENST00000526204 LIFRP42702 1097 aa24.64■■□□□ 1.54
VPS28-205ENST00000526204 EIF5P55010 431 aaKnown RBP24.64■■□□□ 1.54
VPS28-205ENST00000526204 CACTINQ8WUQ7 758 aaKnown RBP24.64■■□□□ 1.54
VPS28-205ENST00000526204 NUP98P52948 1817 aa24.64■■□□□ 1.53
VPS28-205ENST00000526204 RBM6P78332 1123 aaKnown RBP24.64■■□□□ 1.53
VPS28-205ENST00000526204 AXDND1Q5T1B0 1012 aaPredicted RBP24.64■■□□□ 1.53
VPS28-205ENST00000526204 JMYQ8N9B5 988 aa24.64■■□□□ 1.53
VPS28-205ENST00000526204 HELBQ8NG08 1087 aaPredicted RBP24.64■■□□□ 1.53
VPS28-205ENST00000526204 GJB4Q9NTQ9 266 aa24.64■■□□□ 1.53
VPS28-205ENST00000526204 DENND2AQ9ULE3 1009 aa24.64■■□□□ 1.53
VPS28-205ENST00000526204 ZNF202O95125 648 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 CCDC144BQ3MJ40 725 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 NFXL1Q6ZNB6 911 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 LRRC8AQ8IWT6 810 aa24.63■■□□□ 1.53
VPS28-205ENST00000526204 CCDC144CPQ8IYA2 1237 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms