RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MCM6Q14566 821 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 BRAPQ7Z569 592 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 GTF3C6Q969F1 213 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 RIOK3O14730 519 aaKnown RBP13.35□□□□□ -0.27
SYNPO-204ENST00000519664 ZNF202O95125 648 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 PI16Q6UXB8 463 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 GPIHBP1Q8IV16 184 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 FTOQ9C0B1 505 aaKnown RBP eCLIP13.35□□□□□ -0.27
SYNPO-204ENST00000519664 JADE2Q9NQC1 790 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 TRPM1Q7Z4N2 1603 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 POLR2DO15514 142 aaKnown RBP13.35□□□□□ -0.27
SYNPO-204ENST00000519664 HSPD1P10809 573 aaKnown RBP13.35□□□□□ -0.27
SYNPO-204ENST00000519664 TMEM266Q2M3C6 531 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 KRI1Q8N9T8 703 aaKnown RBP13.35□□□□□ -0.27
SYNPO-204ENST00000519664 NEO1Q92859 1461 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 ARHGEF25Q86VW2 580 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 CALML4Q96GE6 196 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 TFCP2L1Q9NZI6 479 aa13.35□□□□□ -0.27
SYNPO-204ENST00000519664 CYP21A2P08686 494 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 ERCC3P19447 782 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 CDR1P51861 262 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 KRT40Q6A162 431 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 MAP4K1Q92918 833 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 UIMC1Q96RL1 719 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 RAB34Q9BZG1 259 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 ADORA1P30542 326 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 CCT6AP40227 531 aaKnown RBP13.34□□□□□ -0.27
SYNPO-204ENST00000519664 CCDC40Q4G0X9 1142 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 AKR1B10O60218 316 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 ZNF75DP51815 510 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 PRM3Q9NNZ6 103 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 KCNH3Q9ULD8 1083 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 USP6P35125 1406 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 FGAP02671 866 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 TAF4BQ92750 862 aa13.34□□□□□ -0.27
SYNPO-204ENST00000519664 ZNF622Q969S3 477 aaKnown RBP eCLIP13.34□□□□□ -0.27
SYNPO-204ENST00000519664 SASH1O94885 1247 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 SLU7O95391 586 aaKnown RBP13.33□□□□□ -0.28
SYNPO-204ENST00000519664 NAPAP54920 295 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 TAX1BP1Q86VP1 789 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 CLTCL1P53675 1640 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 ASIC1P78348 528 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 MYL5Q02045 173 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 TCIRG1Q13488 830 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 ARID5AQ03989 594 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 PUF60Q9UHX1 559 aaKnown RBP13.33□□□□□ -0.28
SYNPO-204ENST00000519664 MLH3Q9UHC1 1453 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 ZFYVE16Q7Z3T8 1539 aa13.33□□□□□ -0.28
SYNPO-204ENST00000519664 GOLGA6L10A6NI86 522 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 PUM3Q15397 648 aaKnown RBP13.32□□□□□ -0.28
SYNPO-204ENST00000519664 TRMT44Q8IYL2 757 aaKnown RBP13.32□□□□□ -0.28
SYNPO-204ENST00000519664 MMRN2Q9H8L6 949 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 TMOD2Q9NZR1 351 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 ASAP1Q9ULH1 1129 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 KDRP35968 1356 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 AEBP2Q6ZN18 517 aaPredicted RBP13.32□□□□□ -0.28
SYNPO-204ENST00000519664 SAP30BPQ9UHR5 308 aaKnown RBP13.32□□□□□ -0.28
SYNPO-204ENST00000519664 RIMBP2O15034 1052 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 PDE8AO60658 829 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 TPTE2Q6XPS3 522 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 LLPHQ9BRT6 129 aaKnown RBP13.32□□□□□ -0.28
SYNPO-204ENST00000519664 FBXO3Q9UK99 471 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 PPP1R9BQ96SB3 815 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 TSG101Q99816 390 aa13.32□□□□□ -0.28
SYNPO-204ENST00000519664 U2AF2P26368 475 aaKnown RBP eCLIP13.31□□□□□ -0.28
SYNPO-204ENST00000519664 EIF6P56537 245 aaKnown RBP13.31□□□□□ -0.28
SYNPO-204ENST00000519664 FEZ1Q99689 392 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 EXOC1Q9NV70 894 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 AATFQ9NY61 560 aaKnown RBP eCLIP13.31□□□□□ -0.28
SYNPO-204ENST00000519664 KIF1BO60333 1816 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 SSR1P43307 286 aaKnown RBP13.31□□□□□ -0.28
SYNPO-204ENST00000519664 SCRN1Q12765 414 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 PI4K2BQ8TCG2 481 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 VPS16Q9H269 839 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 NRBP1Q9UHY1 535 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 ZCCHC11Q5TAX3 1644 aaKnown RBP13.31□□□□□ -0.28
SYNPO-204ENST00000519664 USO1O60763 962 aaKnown RBP13.31□□□□□ -0.28
SYNPO-204ENST00000519664 PHACTR2O75167 634 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 KRT2P35908 639 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 USP8P40818 1118 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 NOP2P46087 812 aaKnown RBP13.31□□□□□ -0.28
SYNPO-204ENST00000519664 PTPN21Q16825 1174 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 KRT222Q8N1A0 295 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 GUCA1BQ9UMX6 200 aa13.31□□□□□ -0.28
SYNPO-204ENST00000519664 GNPATO15228 680 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 PAFAH1B1P43034 410 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 FANCCQ00597 558 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 CUL4AQ13619 759 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 BMS1Q14692 1282 aaKnown RBP13.3□□□□□ -0.28
SYNPO-204ENST00000519664 EPHA10Q5JZY3 1008 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 UTP14CQ5TAP6 766 aaKnown RBP13.3□□□□□ -0.28
SYNPO-204ENST00000519664 PIK3AP1Q6ZUJ8 805 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 HAUS7Q99871 368 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 COPRSQ9NQ92 184 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 SLAIN2Q9P270 581 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 TNNI2P48788 182 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 LMAN1P49257 510 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 MYSM1Q5VVJ2 828 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 GPHNQ9NQX3 736 aaPredicted RBP13.3□□□□□ -0.28
SYNPO-204ENST00000519664 VPS54Q9P1Q0 977 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms