RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-222ENST00000515609 NEK1Q96PY6 1258 aa11.27□□□□□ -0.61
TPM3-222ENST00000515609 CRNKL1Q9BZJ0 848 aaKnown RBP11.27□□□□□ -0.61
TPM3-222ENST00000515609 NAPBQ9H115 298 aa11.27□□□□□ -0.61
TPM3-222ENST00000515609 IL25Q9H293 177 aa11.27□□□□□ -0.61
TPM3-222ENST00000515609 RNF41Q9H4P4 317 aaPredicted RBP11.27□□□□□ -0.61
TPM3-222ENST00000515609 CNNM2Q9H8M5 875 aa11.27□□□□□ -0.61
TPM3-222ENST00000515609 SH2B1Q9NRF2 756 aaPredicted RBP11.27□□□□□ -0.61
TPM3-222ENST00000515609 FAM205AQ6ZU69 1335 aa11.27□□□□□ -0.61
TPM3-222ENST00000515609 TAF1P21675 1872 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 M0R2C6 588 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 SLC3A2P08195 630 aaKnown RBP11.26□□□□□ -0.61
TPM3-222ENST00000515609 CCDC93Q567U6 631 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 UPF1Q92900 1129 aaKnown RBP eCLIP11.26□□□□□ -0.61
TPM3-222ENST00000515609 INTS4Q96HW7 963 aaKnown RBP11.26□□□□□ -0.61
TPM3-222ENST00000515609 STRBPQ96SI9 672 aaKnown RBP11.26□□□□□ -0.61
TPM3-222ENST00000515609 SEC62Q99442 399 aaKnown RBP11.26□□□□□ -0.61
TPM3-222ENST00000515609 RTFDC1Q9BY42 306 aaPredicted RBP11.26□□□□□ -0.61
TPM3-222ENST00000515609 PUS7LQ9H0K6 701 aaKnown RBP11.26□□□□□ -0.61
TPM3-222ENST00000515609 PDRG1Q9NUG6 133 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 PIM2Q9P1W9 311 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 POLLQ9UGP5 575 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 WWC3Q9ULE0 1092 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 IQSEC3Q9UPP2 1182 aaPredicted RBP11.26□□□□□ -0.61
TPM3-222ENST00000515609 LIMCH1Q9UPQ0 1083 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 CD2APQ9Y5K6 639 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 IRS2Q9Y4H2 1338 aa11.26□□□□□ -0.61
TPM3-222ENST00000515609 DOCK2Q92608 1830 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 MBD4O95243 580 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 TDO2P48775 406 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 FKBP1AP62942 108 aaKnown RBP11.25□□□□□ -0.61
TPM3-222ENST00000515609 CCDC129Q6ZRS4 1044 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 NCOA7Q8NI08 942 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 ATP8A2Q9NTI2 1148 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 CHMP5Q9NZZ3 219 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 PALD1Q9ULE6 856 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.25□□□□□ -0.61
TPM3-222ENST00000515609 WDR19Q8NEZ3 1342 aa11.25□□□□□ -0.61
TPM3-222ENST00000515609 FGAP02671 866 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 CYP21A2P08686 494 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 RPS6KB1P23443 525 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 MECOMQ03112 1051 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 MFSD14BQ5SR56 506 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 DHX32Q7L7V1 743 aaKnown RBP11.24□□□□□ -0.61
TPM3-222ENST00000515609 RASEFQ8IZ41 740 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 NSUN4Q96CB9 384 aaKnown RBP11.24□□□□□ -0.61
TPM3-222ENST00000515609 FAM163AQ96GL9 167 aaPredicted RBP11.24□□□□□ -0.61
TPM3-222ENST00000515609 PSMD1Q99460 953 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 MTA3Q9BTC8 594 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 UPF3BQ9BZI7 483 aaKnown RBP11.24□□□□□ -0.61
TPM3-222ENST00000515609 KRT23Q9C075 422 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 ZNF287Q9HBT7 754 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 SLC4A4Q9Y6R1 1079 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 MYH13Q9UKX3 1938 aa11.24□□□□□ -0.61
TPM3-222ENST00000515609 KLRK1P26718 216 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 CHRNA5P30532 468 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 MCM5P33992 734 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 MMP14P50281 582 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 NUCB2P80303 420 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 SART3Q15020 963 aaKnown RBP11.23□□□□□ -0.61
TPM3-222ENST00000515609 R3HDM1Q15032 1099 aaKnown RBP11.23□□□□□ -0.61
TPM3-222ENST00000515609 TTLL5Q6EMB2 1281 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 TXNRD3Q86VQ6 643 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 IFNL3Q8IZI9 196 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 FBXL16Q8N461 479 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 MRIQ9BWK5 157 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 TAOK2Q9UL54 1235 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 KIF3AQ9Y496 699 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 MYO3BQ8WXR4 1341 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 COL4A1P02462 1669 aa11.23□□□□□ -0.61
TPM3-222ENST00000515609 E7EWF7 191 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 DHX16O60231 1041 aaKnown RBP11.22□□□□□ -0.61
TPM3-222ENST00000515609 ZBTB7AO95365 584 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 PPP4CP60510 307 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 HDLBPQ00341 1268 aaKnown RBP11.22□□□□□ -0.61
TPM3-222ENST00000515609 KIAA2012Q0VF49 1180 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 DALRD3Q5D0E6 543 aaKnown RBP11.22□□□□□ -0.61
TPM3-222ENST00000515609 STRIP1Q5VSL9 837 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 MAST2Q6P0Q8 1798 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 TMTC2Q8N394 836 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 C7orf43Q8WVR3 580 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 TMX3Q96JJ7 454 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 TTC14Q96N46 770 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 ARMT1Q9H993 441 aa11.22□□□□□ -0.61
TPM3-222ENST00000515609 ARPP21Q9UBL0 812 aaPredicted RBP11.22□□□□□ -0.61
TPM3-222ENST00000515609 CCDC88AQ3V6T2 1871 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 COL11A2P13942 1736 aaPredicted RBP11.21□□□□□ -0.61
TPM3-222ENST00000515609 LTBP1Q14766 1721 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 MROH7-TTC4A0A0A0MT08 1334 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 ERICH2A1L162 156 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 RIMBP2O15034 1052 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 PRDX5P30044 214 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 AK2P54819 239 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 GTF2IP78347 998 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 CUL4AQ13619 759 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 MFSD6Q6ZSS7 791 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 MIGA1Q8NAN2 632 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 TMEM87BQ96K49 555 aa11.21□□□□□ -0.61
TPM3-222ENST00000515609 RIOK1Q9BRS2 568 aaKnown RBP11.21□□□□□ -0.61
TPM3-222ENST00000515609 DLEC1Q9Y238 1755 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms