RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SBF2Q86WG5 1849 aa24.82■■□□□ 1.56
CCDC88B-208ENST00000492980 GTF2E1P29083 439 aaPredicted RBP24.82■■□□□ 1.56
CCDC88B-208ENST00000492980 NYXQ9GZU5 481 aa24.82■■□□□ 1.56
CCDC88B-208ENST00000492980 EPB41L4AQ9HCS5 686 aaPredicted RBP24.82■■□□□ 1.56
CCDC88B-208ENST00000492980 KLF18A0A0U1RQI7 1052 aa24.81■■□□□ 1.56
CCDC88B-208ENST00000492980 PATL2C9JE40 543 aaKnown RBP24.81■■□□□ 1.56
CCDC88B-208ENST00000492980 TRDNQ13061 729 aa24.81■■□□□ 1.56
CCDC88B-208ENST00000492980 RRAGDQ9NQL2 400 aaPredicted RBP24.81■■□□□ 1.56
CCDC88B-208ENST00000492980 TFIP11Q9UBB9 837 aaKnown RBP24.81■■□□□ 1.56
CCDC88B-208ENST00000492980 DENND2AQ9ULE3 1009 aa24.81■■□□□ 1.56
CCDC88B-208ENST00000492980 NKX2-3Q8TAU0 364 aa24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 LEO1Q8WVC0 666 aaPredicted RBP24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 SPATA32Q96LK8 384 aa24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 ARMT1Q9H993 441 aa24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 HPS5Q9UPZ3 1129 aa24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 UBE4AQ14139 1066 aa24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 CELF1Q92879 486 aaKnown RBP24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 SETDB2Q96T68 719 aa24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 CHD4Q14839 1912 aa24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 CARMIL3Q8ND23 1372 aa24.8■■□□□ 1.56
CCDC88B-208ENST00000492980 TIAM2Q8IVF5 1701 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 GOLGA8BA8MQT2 603 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 ZPR1O75312 459 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 AMIGO3Q86WK7 504 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 IFNL3Q8IZI9 196 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 GJD4Q96KN9 370 aaPredicted RBP24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 MINPP1Q9UNW1 487 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 RTCBQ9Y3I0 505 aaKnown RBP24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 C4AP0C0L4 1744 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 C4BP0C0L5 1744 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 FDPSP14324 419 aaKnown RBP24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 FOSBP53539 338 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 CYB5R4Q7L1T6 521 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 RNF214Q8ND24 703 aa24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 TRIM44Q96DX7 344 aaPredicted RBP24.79■■□□□ 1.56
CCDC88B-208ENST00000492980 COL1A1P02452 1464 aaPredicted RBP24.78■■□□□ 1.56
CCDC88B-208ENST00000492980 PNPLA7Q6ZV29 1317 aa24.78■■□□□ 1.56
CCDC88B-208ENST00000492980 WTIPA6NIX2 430 aaPredicted RBP24.78■■□□□ 1.56
CCDC88B-208ENST00000492980 GYG1P46976 350 aa24.78■■□□□ 1.56
CCDC88B-208ENST00000492980 PPFIA3O75145 1194 aa24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 NBPF5PQ86XG9 351 aaPredicted RBP24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 IQSEC3Q9UPP2 1182 aaPredicted RBP24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 NEDD4P46934 1319 aa24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 GSG1L2A8MUP6 293 aa24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 KLHL34Q8N239 644 aa24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 LCORLQ8N3X6 602 aa24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 NAPBQ9H115 298 aa24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 LRP2BPQ9P2M1 347 aa24.77■■□□□ 1.56
CCDC88B-208ENST00000492980 ARHGEF1Q92888 912 aaKnown RBP24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 PDLIM2Q96JY6 352 aa24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 ANGEL1Q9UNK9 670 aaKnown RBP24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 SH2B2O14492 632 aaPredicted RBP24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 DHX16O60231 1041 aaKnown RBP24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 GNAT2P19087 354 aa24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 MEX3CQ5U5Q3 659 aaKnown RBP24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 NLRP3Q96P20 1036 aa24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 GNL3LQ9NVN8 582 aaKnown RBP24.76■■□□□ 1.55
CCDC88B-208ENST00000492980 B4E1Z4 1266 aa24.75■■□□□ 1.55
CCDC88B-208ENST00000492980 ADD1P35611 737 aaKnown RBP24.75■■□□□ 1.55
CCDC88B-208ENST00000492980 PRKAB2O43741 272 aa24.74■■□□□ 1.55
CCDC88B-208ENST00000492980 LIG1P18858 919 aa24.74■■□□□ 1.55
CCDC88B-208ENST00000492980 CFAP45Q9UL16 551 aa24.74■■□□□ 1.55
CCDC88B-208ENST00000492980 GIMAP6Q6P9H5 292 aa24.74■■□□□ 1.55
CCDC88B-208ENST00000492980 RAB11FIP4Q86YS3 637 aa24.74■■□□□ 1.55
CCDC88B-208ENST00000492980 FUCA2Q9BTY2 467 aa24.74■■□□□ 1.55
CCDC88B-208ENST00000492980 SLC4A4Q9Y6R1 1079 aa24.74■■□□□ 1.55
CCDC88B-208ENST00000492980 AFF2P51816 1311 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 RPS8P62241 208 aaKnown RBP24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 CAVIN4Q5BKX8 364 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 TPTE2Q6XPS3 522 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 PGBD1Q96JS3 809 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 CACNA1SQ13698 1873 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 CTDSPL2Q05D32 466 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 MIGA1Q8NAN2 632 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 TMEM87BQ96K49 555 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 TACC3Q9Y6A5 838 aa24.73■■□□□ 1.55
CCDC88B-208ENST00000492980 TNRC6CQ9HCJ0 1690 aaKnown RBP24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 GOLGA6L4A6NEF3 574 aa24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 ONECUT3O60422 494 aaPredicted RBP24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 CYP7A1P22680 504 aa24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 GUCY1B3Q02153 619 aa24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 ADGRA1Q86SQ6 560 aa24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 CCDC24Q8N4L8 307 aa24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 FAM84BQ96KN1 310 aaPredicted RBP24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 INCENPQ9NQS7 918 aa24.72■■□□□ 1.55
CCDC88B-208ENST00000492980 IGDCC4Q8TDY8 1250 aa24.71■■□□□ 1.55
CCDC88B-208ENST00000492980 NACAP1Q9BZK3 213 aa24.71■■□□□ 1.55
CCDC88B-208ENST00000492980 ABCF2Q9UG63 623 aa24.71■■□□□ 1.55
CCDC88B-208ENST00000492980 ILDR1Q86SU0 546 aaPredicted RBP24.71■■□□□ 1.55
CCDC88B-208ENST00000492980 ORC3Q9UBD5 711 aaPredicted RBP24.71■■□□□ 1.55
CCDC88B-208ENST00000492980 ESPNB1AK53 854 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 CPLX1O14810 134 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 TDO2P48775 406 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 AKNAD1Q5T1N1 836 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 VPS37DQ86XT2 251 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 SENP2Q9HC62 589 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 RAI14Q9P0K7 980 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 FBXO33Q7Z6M2 555 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 CNNM2Q9H8M5 875 aa24.7■■□□□ 1.54
CCDC88B-208ENST00000492980 LY9Q9HBG7 655 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms