RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 SUCLG2Q96I99 432 aa12.24□□□□□ -0.45
CCDC171-208ENST00000486641 TUBE1Q9UJT0 475 aa12.24□□□□□ -0.45
CCDC171-208ENST00000486641 CARMIL3Q8ND23 1372 aa12.24□□□□□ -0.45
CCDC171-208ENST00000486641 KCNQ3O43525 872 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 PHACTR2O75167 634 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 EIF3JO75822 258 aaKnown RBP12.23□□□□□ -0.45
CCDC171-208ENST00000486641 YEATS4O95619 227 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 PDIA3P30101 505 aaKnown RBP12.23□□□□□ -0.45
CCDC171-208ENST00000486641 AXDND1Q5T1B0 1012 aaPredicted RBP12.23□□□□□ -0.45
CCDC171-208ENST00000486641 MSL3Q8N5Y2 521 aaKnown RBP12.23□□□□□ -0.45
CCDC171-208ENST00000486641 KLHDC4Q8TBB5 520 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 BICC1Q9H694 974 aaKnown RBP12.23□□□□□ -0.45
CCDC171-208ENST00000486641 MRPL44Q9H9J2 332 aaKnown RBP12.23□□□□□ -0.45
CCDC171-208ENST00000486641 POLR3EQ9NVU0 708 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 ZNF609O15014 1411 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 USP6P35125 1406 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 A2ML1A8K2U0 1454 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 HMGB1P09429 215 aaKnown RBP12.23□□□□□ -0.45
CCDC171-208ENST00000486641 CMA1P23946 247 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 HSP90AA4PQ58FG1 418 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 POTEDQ86YR6 584 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 GPATCH11Q8N954 259 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 MSANTD4Q8NCY6 345 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 DEF6Q9H4E7 631 aa12.23□□□□□ -0.45
CCDC171-208ENST00000486641 WDHD1O75717 1129 aaPredicted RBP12.22□□□□□ -0.45
CCDC171-208ENST00000486641 TEFQ10587 303 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 E2F4Q16254 413 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 MCMDC2Q4G0Z9 681 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 CHST3Q7LGC8 479 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 CNNM3Q8NE01 707 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 CCDC102AQ96A19 550 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 AGXT2Q9BYV1 514 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 A0A0G2JLW4 131 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 PLEKHG3A1L390 1219 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 ERLIN1O75477 346 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 PSEN1P49768 467 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 PNOCQ13519 176 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 CASP8Q14790 479 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 MTF1Q14872 753 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 MROH7-TTC4A0A0A0MT08 1334 aa12.22□□□□□ -0.45
CCDC171-208ENST00000486641 A0A0U1RQJ8 604 aa12.21□□□□□ -0.45
CCDC171-208ENST00000486641 MARCKSP29966 332 aaPredicted RBP12.21□□□□□ -0.45
CCDC171-208ENST00000486641 MYSM1Q5VVJ2 828 aa12.21□□□□□ -0.45
CCDC171-208ENST00000486641 SUGP1Q8IWZ8 645 aaKnown RBP12.21□□□□□ -0.45
CCDC171-208ENST00000486641 FAM71BQ8TC56 605 aa12.21□□□□□ -0.45
CCDC171-208ENST00000486641 ATRIPQ8WXE1 791 aa12.21□□□□□ -0.45
CCDC171-208ENST00000486641 LZTFL1Q9NQ48 299 aa12.21□□□□□ -0.45
CCDC171-208ENST00000486641 GJB4Q9NTQ9 266 aa12.21□□□□□ -0.45
CCDC171-208ENST00000486641 CDC23Q9UJX2 597 aa12.21□□□□□ -0.45
CCDC171-208ENST00000486641 NCAPD2Q15021 1401 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 POTEB2H3BUK9 544 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 CPP00450 1065 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 RHOXF2BP0C7M4 288 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 SYKP43405 635 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 VSNL1P62760 191 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 CEP112Q8N8E3 955 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 ZNF274Q96GC6 653 aaPredicted RBP12.21□□□□□ -0.46
CCDC171-208ENST00000486641 RHOXF2Q9BQY4 288 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 FAM204AQ9H8W3 233 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 LGR6Q9HBX8 967 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 NRXN3Q9Y4C0 1643 aa12.21□□□□□ -0.46
CCDC171-208ENST00000486641 KIF28PB7ZC32 967 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 TFRCP02786 760 aaKnown RBP12.2□□□□□ -0.46
CCDC171-208ENST00000486641 ATP5JP18859 108 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 PDE4BQ07343 736 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 HSP90B2PQ58FF3 399 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 ANO1Q5XXA6 986 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 OLFM4Q6UX06 510 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 SYNE3Q6ZMZ3 975 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 EFCAB13Q8IY85 973 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 C19orf44Q9H6X5 657 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 HDAC5Q9UQL6 1122 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 LRRIQ3A6PVS8 624 aaPredicted RBP12.2□□□□□ -0.46
CCDC171-208ENST00000486641 GRM8O00222 908 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 PPFIA4O75335 1185 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 NPM1P06748 294 aaKnown RBP eCLIP12.2□□□□□ -0.46
CCDC171-208ENST00000486641 HOXB7P09629 217 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 CDC27P30260 824 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 SKIDA1Q1XH10 827 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 PROSER3Q2NL68 480 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 SPECC1LQ69YQ0 1117 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 KSR2Q6VAB6 950 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 FOXP4Q8IVH2 680 aaPredicted RBP12.2□□□□□ -0.46
CCDC171-208ENST00000486641 C8orf76Q96K31 380 aa12.2□□□□□ -0.46
CCDC171-208ENST00000486641 SOWAHDA6NJG2 315 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 E7EWF7 191 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 MYO1BO43795 1136 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 SWT1Q5T5J6 900 aaKnown RBP12.19□□□□□ -0.46
CCDC171-208ENST00000486641 MMS22LQ6ZRQ5 1243 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.19□□□□□ -0.46
CCDC171-208ENST00000486641 DBNLQ9UJU6 430 aaKnown RBP12.19□□□□□ -0.46
CCDC171-208ENST00000486641 CCDC175P0C221 793 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 BMP6P22004 513 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 MCTP2Q6DN12 878 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 TADA2BQ86TJ2 420 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 MICALL1Q8N3F8 863 aa12.19□□□□□ -0.46
CCDC171-208ENST00000486641 LTV1Q96GA3 475 aaPredicted RBP12.19□□□□□ -0.46
CCDC171-208ENST00000486641 GPHNQ9NQX3 736 aaPredicted RBP12.19□□□□□ -0.46
CCDC171-208ENST00000486641 DBF4Q9UBU7 674 aaPredicted RBP12.19□□□□□ -0.46
CCDC171-208ENST00000486641 HPSEQ9Y251 543 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms