RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 BICD1Q96G01 975 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 CDHR1Q96JP9 859 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 IWS1Q96ST2 819 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 NAP1L4Q99733 375 aaKnown RBP5.99□□□□□ -1.45
COL3A1-205ENST00000470167 BAG1Q99933 345 aaPredicted RBP5.99□□□□□ -1.45
COL3A1-205ENST00000470167 CRACR2AQ9BSW2 395 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 YIPF2Q9BWQ6 316 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 BRINP2Q9C0B6 783 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 DHX36Q9H2U1 1008 aaKnown RBP5.99□□□□□ -1.45
COL3A1-205ENST00000470167 SPC25Q9HBM1 224 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 CASS4Q9NQ75 786 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 SFMBT1Q9UHJ3 866 aa5.99□□□□□ -1.45
COL3A1-205ENST00000470167 TMA7Q9Y2S6 64 aaKnown RBP5.99□□□□□ -1.45
COL3A1-205ENST00000470167 PIK3R4Q99570 1358 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 MYCP01106 439 aaPredicted RBP5.98□□□□□ -1.45
COL3A1-205ENST00000470167 GJA8P48165 433 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 CCDC173Q0VFZ6 552 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 NAALADL2Q58DX5 795 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 HHATQ5VTY9 493 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 CHCHD4Q8N4Q1 142 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 GABPB2Q8TAK5 448 aaPredicted RBP5.98□□□□□ -1.45
COL3A1-205ENST00000470167 RUNDC1Q96C34 613 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 DHRS1Q96LJ7 313 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 MAP3K14Q99558 947 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 MAK16Q9BXY0 300 aaKnown RBP5.98□□□□□ -1.45
COL3A1-205ENST00000470167 NACA2Q9H009 215 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 RPAP3Q9H6T3 665 aaPredicted RBP5.98□□□□□ -1.45
COL3A1-205ENST00000470167 TMPRSS4Q9NRS4 437 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 PLA2G2EQ9NZK7 142 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 SPATA7Q9P0W8 599 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 POGKQ9P215 609 aa5.98□□□□□ -1.45
COL3A1-205ENST00000470167 H7C1W4 665 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 NPHP1O15259 732 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 MTRF1O75570 445 aaKnown RBP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 STAU1O95793 577 aaKnown RBP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 SMARCA1P28370 1054 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 NSUN2Q08J23 767 aaKnown RBP eCLIP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 DHX8Q14562 1220 aaKnown RBP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 POSTNQ15063 836 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 RABEP1Q15276 862 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 RBBP5Q15291 538 aaKnown RBP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 LONRF1Q17RB8 773 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 COBLL1Q53SF7 1204 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 ANKRD45Q5TZF3 282 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 SFMBT2Q5VUG0 894 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 CCDC80Q76M96 950 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 SKAP1Q86WV1 359 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 LRRC49Q8IUZ0 686 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 TRIM42Q8IWZ5 723 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 SAMD14Q8IZD0 417 aaPredicted RBP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 RNPC3Q96LT9 517 aaKnown RBP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 CDK15Q96Q40 435 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 CYLDQ9NQC7 956 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 ATG3Q9NT62 314 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 EXOC1Q9NV70 894 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 MKS1Q9NXB0 559 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 DCAF16Q9NXF7 216 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 TRMT1Q9NXH9 659 aaKnown RBP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 ZMAT5Q9UDW3 170 aaKnown RBP5.97□□□□□ -1.45
COL3A1-205ENST00000470167 PRR12Q9ULL5 1215 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 SLC45A1Q9Y2W3 748 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 SLC30A1Q9Y6M5 507 aa5.97□□□□□ -1.45
COL3A1-205ENST00000470167 TMEM238LA0A1B0GVL6 79 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 SNUPNO95149 360 aaKnown RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 CD2BP2O95400 341 aaKnown RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 GRM5P41594 1212 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 SERPINB4P48594 390 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 ZNF131P52739 623 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 ERVK-9P63128 1117 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 NUCB2P80303 420 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 NOLC1Q14978 699 aaKnown RBP eCLIP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 OCLNQ16625 522 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 INF2Q27J81 1249 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 PLEKHG6Q3KR16 790 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 TTC19Q6DKK2 380 aaPredicted RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 PACS1Q6VY07 963 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 WAPLQ7Z5K2 1190 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 RELL1Q8IUW5 271 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 ZNF784Q8NCA9 323 aaPredicted RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 TSEN2Q8NCE0 465 aaKnown RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 UHMK1Q8TAS1 419 aaKnown RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 CHMP7Q8WUX9 453 aaPredicted RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 THOC1Q96FV9 657 aaKnown RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 VMP1Q96GC9 406 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 CCDC34Q96HJ3 373 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 HINFPQ9BQA5 517 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 PANK2Q9BZ23 570 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 TRIM6Q9C030 488 aaPredicted RBP5.96□□□□□ -1.46
COL3A1-205ENST00000470167 LNPKQ9C0E8 428 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 TSPY26PQ9H489 355 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 TBC1D7Q9P0N9 293 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 CCDC39Q9UFE4 941 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 ATP6V0A2Q9Y487 856 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 PEG3Q9GZU2 1588 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 CC2D2AQ9P2K1 1620 aa5.96□□□□□ -1.46
COL3A1-205ENST00000470167 TMEM229AB2RXF0 380 aa5.95□□□□□ -1.46
COL3A1-205ENST00000470167 SIAH2O43255 324 aa5.95□□□□□ -1.46
COL3A1-205ENST00000470167 MYO1BO43795 1136 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms