RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 GTF2E1P29083 439 aaPredicted RBP16.38■□□□□ 0.21
PTPRN-210ENST00000460801 SETDB2Q96T68 719 aa16.38■□□□□ 0.21
PTPRN-210ENST00000460801 NAP1L2Q9ULW6 460 aaPredicted RBP16.38■□□□□ 0.21
PTPRN-210ENST00000460801 LY75O60449 1722 aa16.38■□□□□ 0.21
PTPRN-210ENST00000460801 TAF1LQ8IZX4 1826 aa16.38■□□□□ 0.21
PTPRN-210ENST00000460801 ZPR1O75312 459 aa16.38■□□□□ 0.21
PTPRN-210ENST00000460801 MBD4O95243 580 aa16.38■□□□□ 0.21
PTPRN-210ENST00000460801 TRDNQ13061 729 aa16.38■□□□□ 0.21
PTPRN-210ENST00000460801 MINPP1Q9UNW1 487 aa16.38■□□□□ 0.21
PTPRN-210ENST00000460801 RTCBQ9Y3I0 505 aaKnown RBP16.38■□□□□ 0.21
PTPRN-210ENST00000460801 TFIP11Q9UBB9 837 aaKnown RBP16.37■□□□□ 0.21
PTPRN-210ENST00000460801 HPS5Q9UPZ3 1129 aa16.37■□□□□ 0.21
PTPRN-210ENST00000460801 SBF2Q86WG5 1849 aa16.37■□□□□ 0.21
PTPRN-210ENST00000460801 KLF18A0A0U1RQI7 1052 aa16.37■□□□□ 0.21
PTPRN-210ENST00000460801 ONECUT3O60422 494 aaPredicted RBP16.37■□□□□ 0.21
PTPRN-210ENST00000460801 PNPLA7Q6ZV29 1317 aa16.37■□□□□ 0.21
PTPRN-210ENST00000460801 IFNL3Q8IZI9 196 aa16.37■□□□□ 0.21
PTPRN-210ENST00000460801 LEO1Q8WVC0 666 aaPredicted RBP16.37■□□□□ 0.21
PTPRN-210ENST00000460801 CELF1Q92879 486 aaKnown RBP16.37■□□□□ 0.21
PTPRN-210ENST00000460801 EPB41L4AQ9HCS5 686 aaPredicted RBP16.37■□□□□ 0.21
PTPRN-210ENST00000460801 DENND2AQ9ULE3 1009 aa16.37■□□□□ 0.21
PTPRN-210ENST00000460801 FDPSP14324 419 aaKnown RBP16.36■□□□□ 0.21
PTPRN-210ENST00000460801 AMIGO3Q86WK7 504 aa16.36■□□□□ 0.21
PTPRN-210ENST00000460801 NBPF5PQ86XG9 351 aaPredicted RBP16.36■□□□□ 0.21
PTPRN-210ENST00000460801 SPATA32Q96LK8 384 aa16.36■□□□□ 0.21
PTPRN-210ENST00000460801 ARMT1Q9H993 441 aa16.36■□□□□ 0.21
PTPRN-210ENST00000460801 GSG1L2A8MUP6 293 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 DHX16O60231 1041 aaKnown RBP16.35■□□□□ 0.21
PTPRN-210ENST00000460801 TPRNQ4KMQ1 711 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 CYB5R4Q7L1T6 521 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 NKX2-3Q8TAU0 364 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 ARHGEF1Q92888 912 aaKnown RBP16.35■□□□□ 0.21
PTPRN-210ENST00000460801 NLRP3Q96P20 1036 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 GNL3LQ9NVN8 582 aaKnown RBP16.35■□□□□ 0.21
PTPRN-210ENST00000460801 LRP2BPQ9P2M1 347 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 CARMIL3Q8ND23 1372 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 WTIPA6NIX2 430 aaPredicted RBP16.35■□□□□ 0.21
PTPRN-210ENST00000460801 GNAT2P19087 354 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 GYG1P46976 350 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 TPTE2Q6XPS3 522 aa16.35■□□□□ 0.21
PTPRN-210ENST00000460801 GOLGA8BA8MQT2 603 aa16.34■□□□□ 0.21
PTPRN-210ENST00000460801 RPS8P62241 208 aaKnown RBP16.34■□□□□ 0.21
PTPRN-210ENST00000460801 PDLIM2Q96JY6 352 aa16.34■□□□□ 0.21
PTPRN-210ENST00000460801 NAPBQ9H115 298 aa16.34■□□□□ 0.21
PTPRN-210ENST00000460801 ANGEL1Q9UNK9 670 aaKnown RBP16.34■□□□□ 0.21
PTPRN-210ENST00000460801 MYH15Q9Y2K3 1946 aa16.34■□□□□ 0.21
PTPRN-210ENST00000460801 SH2B2O14492 632 aaPredicted RBP16.34■□□□□ 0.21
PTPRN-210ENST00000460801 ADD1P35611 737 aaKnown RBP16.34■□□□□ 0.21
PTPRN-210ENST00000460801 MEX3CQ5U5Q3 659 aaKnown RBP16.34■□□□□ 0.21
PTPRN-210ENST00000460801 LCORLQ8N3X6 602 aa16.34■□□□□ 0.21
PTPRN-210ENST00000460801 RRAGDQ9NQL2 400 aaPredicted RBP16.34■□□□□ 0.21
PTPRN-210ENST00000460801 CFAP45Q9UL16 551 aa16.34■□□□□ 0.21
PTPRN-210ENST00000460801 IQSEC3Q9UPP2 1182 aaPredicted RBP16.34■□□□□ 0.21
PTPRN-210ENST00000460801 NEDD4P46934 1319 aa16.33■□□□□ 0.21
PTPRN-210ENST00000460801 AFF2P51816 1311 aa16.33■□□□□ 0.21
PTPRN-210ENST00000460801 CAVIN4Q5BKX8 364 aa16.33■□□□□ 0.2
PTPRN-210ENST00000460801 TRIM44Q96DX7 344 aaPredicted RBP16.33■□□□□ 0.2
PTPRN-210ENST00000460801 TMEM87BQ96K49 555 aa16.33■□□□□ 0.2
PTPRN-210ENST00000460801 FAM84BQ96KN1 310 aaPredicted RBP16.33■□□□□ 0.2
PTPRN-210ENST00000460801 COL1A1P02452 1464 aaPredicted RBP16.33■□□□□ 0.2
PTPRN-210ENST00000460801 CHD4Q14839 1912 aa16.33■□□□□ 0.2
PTPRN-210ENST00000460801 C4BP0C0L5 1744 aa16.33■□□□□ 0.2
PTPRN-210ENST00000460801 TIAM2Q8IVF5 1701 aa16.33■□□□□ 0.2
PTPRN-210ENST00000460801 B4E1Z4 1266 aa16.33■□□□□ 0.2
PTPRN-210ENST00000460801 PRKAB2O43741 272 aa16.33■□□□□ 0.2
PTPRN-210ENST00000460801 FUCA2Q9BTY2 467 aa16.33■□□□□ 0.2
PTPRN-210ENST00000460801 FBXO33Q7Z6M2 555 aa16.32■□□□□ 0.2
PTPRN-210ENST00000460801 RNF214Q8ND24 703 aa16.32■□□□□ 0.2
PTPRN-210ENST00000460801 IGDCC4Q8TDY8 1250 aa16.32■□□□□ 0.2
PTPRN-210ENST00000460801 NACAP1Q9BZK3 213 aa16.32■□□□□ 0.2
PTPRN-210ENST00000460801 TACC3Q9Y6A5 838 aa16.32■□□□□ 0.2
PTPRN-210ENST00000460801 SLC4A4Q9Y6R1 1079 aa16.32■□□□□ 0.2
PTPRN-210ENST00000460801 C4AP0C0L4 1744 aa16.32■□□□□ 0.2
PTPRN-210ENST00000460801 PPFIA3O75145 1194 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 LIG1P18858 919 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 CYP7A1P22680 504 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 TM4SF1P30408 202 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 FOSBP53539 338 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 AKNAD1Q5T1N1 836 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 ATL3Q6DD88 541 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 PGBD1Q96JS3 809 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 GOLGA6L4A6NEF3 574 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 CTDSPL2Q05D32 466 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 ADGRA1Q86SQ6 560 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 MIGA1Q8NAN2 632 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 CNNM2Q9H8M5 875 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 INCENPQ9NQS7 918 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 ABCF2Q9UG63 623 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 CACNA1SQ13698 1873 aa16.31■□□□□ 0.2
PTPRN-210ENST00000460801 CPLX1O14810 134 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 SEMA3EO15041 775 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 RFC4P35249 363 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 TRAPPC3LQ5T215 181 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 GIMAP6Q6P9H5 292 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 SGMS1Q86VZ5 419 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 SEPT12Q8IYM1 358 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 CERKQ8TCT0 537 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 STAG1Q8WVM7 1258 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 ANKRD2Q9GZV1 360 aa16.3■□□□□ 0.2
PTPRN-210ENST00000460801 ZSWIM5Q9P217 1185 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms