RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 ANKRD34AQ69YU3 496 aa4.28□□□□□ -1.72
PTPRC-208ENST00000427110 GLIS3Q8NEA6 775 aa4.28□□□□□ -1.72
PTPRC-208ENST00000427110 ALKBH8Q96BT7 664 aaKnown RBP4.28□□□□□ -1.72
PTPRC-208ENST00000427110 ZC3H12CQ9C0D7 883 aaKnown RBP4.28□□□□□ -1.72
PTPRC-208ENST00000427110 DNAJC25Q9H1X3 360 aa4.28□□□□□ -1.72
PTPRC-208ENST00000427110 SOX17Q9H6I2 414 aaPredicted RBP4.28□□□□□ -1.72
PTPRC-208ENST00000427110 WWC3Q9ULE0 1092 aa4.28□□□□□ -1.72
PTPRC-208ENST00000427110 CCDC9Q9Y3X0 531 aaKnown RBP4.28□□□□□ -1.72
PTPRC-208ENST00000427110 TMEM238LA0A1B0GVL6 79 aa4.27□□□□□ -1.73
PTPRC-208ENST00000427110 TREHO43280 583 aa4.27□□□□□ -1.73
PTPRC-208ENST00000427110 B3GALT4O96024 378 aa4.27□□□□□ -1.73
PTPRC-208ENST00000427110 TGFB1P01137 390 aa4.27□□□□□ -1.73
PTPRC-208ENST00000427110 ITPKAP23677 461 aa4.27□□□□□ -1.73
PTPRC-208ENST00000427110 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.27□□□□□ -1.73
PTPRC-208ENST00000427110 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.27□□□□□ -1.73
PTPRC-208ENST00000427110 BEND4Q6ZU67 534 aa4.27□□□□□ -1.73
PTPRC-208ENST00000427110 SND1Q7KZF4 910 aaKnown RBP eCLIP4.27□□□□□ -1.732e-7■□□□□ 9.2
PTPRC-208ENST00000427110 FAM20CQ8IXL6 584 aa4.27□□□□□ -1.73
PTPRC-208ENST00000427110 BCO2Q9BYV7 579 aa4.27□□□□□ -1.73
PTPRC-208ENST00000427110 MEGF11A6BM72 1044 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 TIAF1O95411 115 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 IGLV1-40P01703 118 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 MAP4P27816 1152 aaKnown RBP4.26□□□□□ -1.73
PTPRC-208ENST00000427110 RXRBP28702 533 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 SSTR4P31391 388 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 PLCB3Q01970 1234 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 POU4F3Q15319 338 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 ENOX2Q16206 610 aaKnown RBP4.26□□□□□ -1.73
PTPRC-208ENST00000427110 CCDC27Q2M243 656 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 UVSSAQ2YD98 709 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 AKAP4Q5JQC9 854 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 ARTNQ5T4W7 220 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 CDPF1Q6NVV7 123 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 PRPF40BQ6NWY9 871 aaKnown RBP4.26□□□□□ -1.73
PTPRC-208ENST00000427110 NXPE4Q6UWF7 544 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 DTHD1Q6ZMT9 781 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 SHISA5Q8N114 240 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 FBLIM1Q8WUP2 373 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 NLRP2Q9NX02 1062 aa4.26□□□□□ -1.73
PTPRC-208ENST00000427110 HYAL3O43820 417 aaPredicted RBP4.25□□□□□ -1.73
PTPRC-208ENST00000427110 CYP11A1P05108 521 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 ADH5P11766 374 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 LIG1P18858 919 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 RAB6AP20340 208 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 MFAP1P55081 439 aaKnown RBP4.25□□□□□ -1.73
PTPRC-208ENST00000427110 NFIAQ12857 509 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 PDE3AQ14432 1141 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 EXOSC6Q5RKV6 272 aaKnown RBP4.25□□□□□ -1.73
PTPRC-208ENST00000427110 FBXL6Q8N531 539 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 C2CD4AQ8NCU7 369 aaPredicted RBP4.25□□□□□ -1.73
PTPRC-208ENST00000427110 SMG8Q8ND04 991 aaKnown RBP4.25□□□□□ -1.73
PTPRC-208ENST00000427110 WDR89Q96FK6 387 aaPredicted RBP4.25□□□□□ -1.73
PTPRC-208ENST00000427110 MFSD14AQ96MC6 490 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 CORO1BQ9BR76 489 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 CYP4F12Q9HCS2 524 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 ZFP64Q9NPA5 681 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 GPN3Q9UHW5 284 aaPredicted RBP4.25□□□□□ -1.73
PTPRC-208ENST00000427110 AP4E1Q9UPM8 1137 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 AKAP2Q9Y2D5 859 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 ACTL7BQ9Y614 415 aa4.25□□□□□ -1.73
PTPRC-208ENST00000427110 FBXO24O75426 580 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 MED26O95402 600 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 P4HBP07237 508 aaKnown RBP4.24□□□□□ -1.73
PTPRC-208ENST00000427110 FMR1Q06787 632 aaKnown RBP eCLIP4.24□□□□□ -1.73
PTPRC-208ENST00000427110 SOX4Q06945 474 aaPredicted RBP4.24□□□□□ -1.73
PTPRC-208ENST00000427110 LRP8Q14114 963 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 RNF43Q68DV7 783 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 DYMQ7RTS9 669 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 ZDHHC13Q8IUH4 622 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 CLEC10AQ8IUN9 316 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 SHKBP1Q8TBC3 707 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 STK35Q8TDR2 534 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 ASB16Q96NS5 453 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 FAM83CQ9BQN1 747 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 CCDC86Q9H6F5 360 aaKnown RBP4.24□□□□□ -1.73
PTPRC-208ENST00000427110 SUGCTQ9HAC7 445 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 LGR6Q9HBX8 967 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 RNF112Q9ULX5 631 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 TRAK1Q9UPV9 953 aa4.24□□□□□ -1.73
PTPRC-208ENST00000427110 WDR64B1ANS9 1081 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 USP11P51784 963 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 NFKBIBQ15653 356 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 ZSCAN29Q8IWY8 852 aaPredicted RBP4.23□□□□□ -1.73
PTPRC-208ENST00000427110 WDR18Q9BV38 432 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 OSBPL7Q9BZF2 842 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 RAD18Q9NS91 495 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 FAM105AQ9NUU6 356 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 RNF19AQ9NV58 838 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 PPP1R9AQ9ULJ8 1098 aa4.23□□□□□ -1.73
PTPRC-208ENST00000427110 FAM95CA0A1B0GW59 222 aa4.22□□□□□ -1.73
PTPRC-208ENST00000427110 DYNC1LI2O43237 492 aaPredicted RBP4.22□□□□□ -1.73
PTPRC-208ENST00000427110 ZNF862O60290 1169 aa4.22□□□□□ -1.73
PTPRC-208ENST00000427110 AOC2O75106 756 aa4.22□□□□□ -1.73
PTPRC-208ENST00000427110 NFICP08651 508 aa4.22□□□□□ -1.73
PTPRC-208ENST00000427110 ADMP35318 185 aa4.22□□□□□ -1.73
PTPRC-208ENST00000427110 PTPN12Q05209 780 aaKnown RBP4.22□□□□□ -1.73
PTPRC-208ENST00000427110 MPRIPQ6WCQ1 1025 aa4.22□□□□□ -1.73
PTPRC-208ENST00000427110 TPTE2Q6XPS3 522 aa4.22□□□□□ -1.73
PTPRC-208ENST00000427110 C3orf58Q8NDZ4 430 aa4.22□□□□□ -1.73
PTPRC-208ENST00000427110 DBNDD2Q9BQY9 259 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms