RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 LOC102724428A0A0B4J2F2 783 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 SOX1O00570 391 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 C6orf222P0C671 652 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ABCG1P45844 678 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 SIK1P57059 783 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 DSG2Q14126 1118 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 Q3C1V9 767 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ATAT1Q5SQI0 421 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ANGEL2Q5VTE6 544 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 CC2D1AQ6P1N0 951 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 TTLL7Q6ZT98 887 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ELMOD1Q8N336 334 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ZC3H15Q8WU90 426 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 RIPOR3Q96MK2 946 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 RTP3Q9BQQ7 232 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 EPS8L2Q9H6S3 715 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ENTPD7Q9NQZ7 604 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 RAPGEFL1Q9UHV5 662 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 LCHNA4D1U4 455 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 IRF6O14896 467 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 GCP02774 474 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 NRLP54845 237 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 TDGQ13569 410 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 RRP1BQ14684 758 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ZNF174Q15697 407 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 RNF43Q68DV7 783 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ZNF790Q6PG37 636 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 C19orf48Q6RUI8 117 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 TRMT1LQ7Z2T5 733 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 DZIP1Q86YF9 867 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 THNSL1Q8IYQ7 743 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 SETD7Q8WTS6 366 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 ZNF594Q96JF6 807 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 TSEN34Q9BSV6 310 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 CLMPQ9H6B4 373 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 APOBEC2Q9Y235 224 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 NUP153P49790 1475 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 EFCAB5A4FU69 1503 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 WTIPA6NIX2 430 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 STXBP3O00186 592 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 POLRMTO00411 1230 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 C8BP07358 591 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 UBE4AQ14139 1066 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 COL23A1Q86Y22 540 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 JAMLQ86YT9 394 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 CCDC86Q9H6F5 360 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 CCDC61Q9Y6R9 512 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 SETXQ7Z333 2677 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 POLA1P09884 1462 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 JUPP14923 745 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 MAGEA10P43363 369 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 NEUROD1Q13562 356 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 NCAPHQ15003 741 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 PPM1JQ5JR12 505 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 USPL1Q5W0Q7 1092 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 PPP4R3AQ6IN85 833 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 KIAA1211LQ6NV74 962 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 SESTD1Q86VW0 696 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 FBXL6Q8N531 539 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 NLRP7Q8WX94 980 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 SGPP1Q9BX95 441 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 TANGO6Q9C0B7 1094 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 DENND2AQ9ULE3 1009 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 DOLKQ9UPQ8 538 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 PTCH2Q9Y6C5 1203 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 MROH7Q68CQ1 1323 aa3.32□□□□□ -1.88
CCDC88A-205ENST00000426576 PLEKHG3A1L390 1219 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 PRAMEF22A3QJZ6 481 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 C19orf81C9J6K1 198 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 VPS4BO75351 444 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 KRT38O76015 456 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 PTPAQ15257 358 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 SNRNP48Q6IEG0 339 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 SDE2Q6IQ49 451 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ZNF804AQ7Z570 1209 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 DZIP3Q86Y13 1208 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 PCSK9Q8NBP7 692 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 OSBP2Q969R2 916 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ZNF428Q96B54 188 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 SH2D4AQ9H788 454 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 VPS4AQ9UN37 437 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 USP9XQ93008 2570 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 U2AF1L5P0DN76 240 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 FXR1P51114 621 aaKnown RBP eCLIP3.31□□□□□ -1.883e-8■■■■□ 23.7
CCDC88A-205ENST00000426576 FGD1P98174 961 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 U2AF1Q01081 240 aaKnown RBP eCLIP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ODR4Q5SWX8 454 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 LIN9Q5TKA1 542 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 HACE1Q8IYU2 909 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 NDRG1Q92597 394 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 IPPQ9Y573 584 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 EVC2Q86UK5 1308 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 PRXQ9BXM0 1461 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 BRWD1Q9NSI6 2320 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 M0R2C6 588 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ATXN7O15265 892 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 LDHCP07864 332 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 ATP2A2P16615 1042 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 CTNNB1P35222 781 aa3.31□□□□□ -1.88
CCDC88A-205ENST00000426576 DAB2P98082 770 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms