RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 HIF3AQ9Y2N7 669 aa5.2□□□□□ -1.58
SF3B1-205ENST00000424674 SOX1O00570 391 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-205ENST00000424674 GAS2O43903 313 aaKnown RBP5.19□□□□□ -1.58
SF3B1-205ENST00000424674 ESRRAP11474 423 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-205ENST00000424674 ZNF16P17020 682 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-205ENST00000424674 CD97P48960 835 aa5.19□□□□□ -1.58
SF3B1-205ENST00000424674 TRIM42Q8IWZ5 723 aa5.19□□□□□ -1.58
SF3B1-205ENST00000424674 GALNT12Q8IXK2 581 aa5.19□□□□□ -1.58
SF3B1-205ENST00000424674 DBNDD2Q9BQY9 259 aa5.19□□□□□ -1.58
SF3B1-205ENST00000424674 KRTAP4-8Q9BYQ9 185 aa5.19□□□□□ -1.58
SF3B1-205ENST00000424674 BRPF3Q9ULD4 1205 aa5.19□□□□□ -1.58
SF3B1-205ENST00000424674 LOC100289279A0A1B0GTE1 492 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 HMX2A2RU54 273 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 MEGF11A6BM72 1044 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 METTL12A8MUP2 240 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 NDUFB5O43674 189 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 TGFB1P01137 390 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 POLR3DP05423 398 aaPredicted RBP5.18□□□□□ -1.58
SF3B1-205ENST00000424674 NEFLP07196 543 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 BMP3P12645 472 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 VAMP1P23763 118 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 SSTR4P31391 388 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 RNF43Q68DV7 783 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 ZDHHC13Q8IUH4 622 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 CLEC10AQ8IUN9 316 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 PSMG3-AS1Q96PY0 264 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 BCL2L13Q9BXK5 485 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 KCNF1Q9H3M0 494 aa5.18□□□□□ -1.58
SF3B1-205ENST00000424674 A0A1W2PP55 124 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 EIF4EBP3O60516 100 aaPredicted RBP5.17□□□□□ -1.58
SF3B1-205ENST00000424674 COBLO75128 1261 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 ARHGAP4P98171 946 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 ECM1Q16610 540 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 NUTM2GQ5VZR2 741 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 DNAJC14Q6Y2X3 702 aaPredicted RBP5.17□□□□□ -1.58
SF3B1-205ENST00000424674 BEND4Q6ZU67 534 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 FAM83CQ9BQN1 747 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 TMPRSS13Q9BYE2 586 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 BCL11AQ9H165 835 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 SUGCTQ9HAC7 445 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 LIN7BQ9HAP6 207 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 CYP4F12Q9HCS2 524 aa5.17□□□□□ -1.58
SF3B1-205ENST00000424674 A0A096LPE4 126 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 A0A1W2PPZ6 126 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 KIAA1324LA8MWY0 1029 aaPredicted RBP5.16□□□□□ -1.58
SF3B1-205ENST00000424674 MARCH6O60337 910 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 GRIK1P39086 918 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 GSTM4Q03013 218 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 PCDH1Q08174 1060 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 PDE3BQ13370 1112 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 CCNJLQ8IV13 435 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 SMG8Q8ND04 991 aaKnown RBP5.16□□□□□ -1.58
SF3B1-205ENST00000424674 FAM129BQ96TA1 746 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 TCF12Q99081 682 aa5.16□□□□□ -1.58
SF3B1-205ENST00000424674 CLEC4MQ9H2X3 399 aaPredicted RBP5.16□□□□□ -1.58
SF3B1-205ENST00000424674 TIAF1O95411 115 aa5.15□□□□□ -1.59
SF3B1-205ENST00000424674 MAP4P27816 1152 aaKnown RBP5.15□□□□□ -1.59
SF3B1-205ENST00000424674 GRIA4P48058 902 aa5.15□□□□□ -1.59
SF3B1-205ENST00000424674 SGO2Q562F6 1265 aa5.15□□□□□ -1.59
SF3B1-205ENST00000424674 NAALADL2Q58DX5 795 aa5.15□□□□□ -1.59
SF3B1-205ENST00000424674 ZNF326Q5BKZ1 582 aaKnown RBP5.15□□□□□ -1.59
SF3B1-205ENST00000424674 USPL1Q5W0Q7 1092 aa5.15□□□□□ -1.59
SF3B1-205ENST00000424674 C12orf50Q8NA57 414 aaPredicted RBP5.15□□□□□ -1.59
SF3B1-205ENST00000424674 NRSN2Q9GZP1 204 aa5.15□□□□□ -1.59
SF3B1-205ENST00000424674 MYH16Q9H6N6 1097 aa5.15□□□□□ -1.59
SF3B1-205ENST00000424674 PPP1R1BQ9UD71 204 aaPredicted RBP5.15□□□□□ -1.59
SF3B1-205ENST00000424674 RIPOR2Q9Y4F9 1068 aa5.15□□□□□ -1.59
SF3B1-205ENST00000424674 CPNE3O75131 537 aaKnown RBP5.14□□□□□ -1.59
SF3B1-205ENST00000424674 DLGAP3O95886 979 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 RXRBP28702 533 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 ORC1Q13415 861 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 SPRED3Q2MJR0 410 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 EXOSC6Q5RKV6 272 aaKnown RBP5.14□□□□□ -1.59
SF3B1-205ENST00000424674 KIAA0319Q5VV43 1072 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 INTS5Q6P9B9 1019 aaKnown RBP5.14□□□□□ -1.59
SF3B1-205ENST00000424674 SHKBP1Q8TBC3 707 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 ZNF526Q8TF50 670 aaPredicted RBP5.14□□□□□ -1.59
SF3B1-205ENST00000424674 GIPC2Q8TF65 315 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 CITED4Q96RK1 184 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 NPHS2Q9NP85 383 aa5.14□□□□□ -1.59
SF3B1-205ENST00000424674 BIN2Q9UBW5 565 aaPredicted RBP5.14□□□□□ -1.59
SF3B1-205ENST00000424674 PRR19A6NJB7 356 aa5.13□□□□□ -1.59
SF3B1-205ENST00000424674 GPR182O15218 404 aa5.13□□□□□ -1.59
SF3B1-205ENST00000424674 MED26O95402 600 aa5.13□□□□□ -1.59
SF3B1-205ENST00000424674 HP1BP3Q5SSJ5 553 aaPredicted RBP5.13□□□□□ -1.59
SF3B1-205ENST00000424674 NOP9Q86U38 636 aaKnown RBP5.13□□□□□ -1.59
SF3B1-205ENST00000424674 EXOC8Q8IYI6 725 aa5.13□□□□□ -1.59
SF3B1-205ENST00000424674 TMC1Q8TDI8 760 aa5.13□□□□□ -1.59
SF3B1-205ENST00000424674 EHD4Q9H223 541 aa5.13□□□□□ -1.59
SF3B1-205ENST00000424674 ZNF576Q9H609 170 aa5.13□□□□□ -1.59
SF3B1-205ENST00000424674 LOC102724159A0A0B4J2E5 919 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 WDR64B1ANS9 1081 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 B3GALT4O96024 378 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 CYP11A1P05108 521 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 ADH5P11766 374 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 SPINK2P20155 84 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 ITPKAP23677 461 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 MAOBP27338 520 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 USP11P51784 963 aa5.12□□□□□ -1.59
SF3B1-205ENST00000424674 SOX4Q06945 474 aaPredicted RBP5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms