RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 CAVIN1Q6NZI2 390 aaKnown RBP11.32□□□□□ -0.6
CMSS1-201ENST00000421999 HAUS7Q99871 368 aa11.32□□□□□ -0.6
CMSS1-201ENST00000421999 ZNF804BA4D1E1 1349 aa11.32□□□□□ -0.6
CMSS1-201ENST00000421999 KLF18A0A0U1RQI7 1052 aa11.32□□□□□ -0.6
CMSS1-201ENST00000421999 SSFA2P28290 1259 aa11.32□□□□□ -0.6
CMSS1-201ENST00000421999 SSRP1Q08945 709 aaKnown RBP11.32□□□□□ -0.6
CMSS1-201ENST00000421999 DOK7Q18PE1 504 aa11.32□□□□□ -0.6
CMSS1-201ENST00000421999 SPATA32Q96LK8 384 aa11.32□□□□□ -0.6
CMSS1-201ENST00000421999 KRT23Q9C075 422 aa11.32□□□□□ -0.6
CMSS1-201ENST00000421999 ORC3Q9UBD5 711 aaPredicted RBP11.32□□□□□ -0.6
CMSS1-201ENST00000421999 SAP30BPQ9UHR5 308 aaKnown RBP11.32□□□□□ -0.6
CMSS1-201ENST00000421999 H7C1D1 291 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 FOXO4P98177 505 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 INTS5Q6P9B9 1019 aaKnown RBP11.31□□□□□ -0.6
CMSS1-201ENST00000421999 OSBPL3Q9H4L5 887 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 ANTXR1Q9H6X2 564 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 CFAP45Q9UL16 551 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 NFAT5O94916 1531 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 TCP10Q12799 353 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 UBE4AQ14139 1066 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 PLS1Q14651 629 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 RC3H1Q5TC82 1133 aaKnown RBP11.31□□□□□ -0.6
CMSS1-201ENST00000421999 SCLT1Q96NL6 688 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 AATFQ9NY61 560 aaKnown RBP eCLIP11.31□□□□□ -0.6
CMSS1-201ENST00000421999 HMGN5P82970 282 aaKnown RBP11.31□□□□□ -0.6
CMSS1-201ENST00000421999 MFSD14BQ5SR56 506 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 Q6ZUG5 572 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 PTF1AQ7RTS3 328 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 CELF1Q92879 486 aaKnown RBP11.31□□□□□ -0.6
CMSS1-201ENST00000421999 SLC26A6Q9BXS9 759 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 GPR108Q9NPR9 543 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 MBD3O95983 291 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 DLGAP5Q15398 846 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 KIAA0825Q8IV33 1275 aa11.31□□□□□ -0.6
CMSS1-201ENST00000421999 GNAT2P19087 354 aa11.3□□□□□ -0.6
CMSS1-201ENST00000421999 RAB3GAP1Q15042 981 aa11.3□□□□□ -0.6
CMSS1-201ENST00000421999 CNNM2Q9H8M5 875 aa11.3□□□□□ -0.6
CMSS1-201ENST00000421999 CIZ1Q9ULV3 898 aaPredicted RBP11.3□□□□□ -0.6
CMSS1-201ENST00000421999 ZBTB43O43298 467 aa11.3□□□□□ -0.6
CMSS1-201ENST00000421999 ZNF34Q8IZ26 560 aa11.3□□□□□ -0.6
CMSS1-201ENST00000421999 NAT10Q9H0A0 1025 aaKnown RBP11.3□□□□□ -0.6
CMSS1-201ENST00000421999 PRM3Q9NNZ6 103 aa11.3□□□□□ -0.6
CMSS1-201ENST00000421999 CDHR2Q9BYE9 1310 aa11.3□□□□□ -0.6
CMSS1-201ENST00000421999 BCL9O00512 1426 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 PSDA5PKW4 1024 aaPredicted RBP11.29□□□□□ -0.6
CMSS1-201ENST00000421999 PRC1O43663 620 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 AK2P54819 239 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 TTF2Q9UNY4 1162 aaKnown RBP11.29□□□□□ -0.6
CMSS1-201ENST00000421999 TNS2Q63HR2 1409 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 BBOX1O75936 387 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 ATP2B4P23634 1241 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 CCDC12Q8WUD4 166 aaPredicted RBP11.29□□□□□ -0.6
CMSS1-201ENST00000421999 MED1Q15648 1581 aaPredicted RBP11.29□□□□□ -0.6
CMSS1-201ENST00000421999 AKAP12Q02952 1782 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 SLC27A2O14975 620 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 PDE6AP16499 860 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 RBM25P49756 843 aaKnown RBP11.29□□□□□ -0.6
CMSS1-201ENST00000421999 PTH1RQ03431 593 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 DEFB132Q7Z7B7 95 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 GPR101Q96P66 508 aaPredicted RBP11.29□□□□□ -0.6
CMSS1-201ENST00000421999 SLIT3O75094 1523 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 SHPRHQ149N8 1683 aa11.29□□□□□ -0.6
CMSS1-201ENST00000421999 PPEF1O14829 653 aaPredicted RBP11.28□□□□□ -0.6
CMSS1-201ENST00000421999 TRAK2O60296 914 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 TTLL5Q6EMB2 1281 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 SLC4A9Q96Q91 983 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 MAST3O60307 1309 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 XDHP47989 1333 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 ATP10DQ9P241 1426 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 PRDM1O75626 825 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 GJB2P29033 226 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 RABL6Q3YEC7 729 aaPredicted RBP11.28□□□□□ -0.6
CMSS1-201ENST00000421999 TMTC2Q8N394 836 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 ZNF526Q8TF50 670 aaPredicted RBP11.28□□□□□ -0.6
CMSS1-201ENST00000421999 BSDC1Q9NW68 430 aaPredicted RBP11.28□□□□□ -0.6
CMSS1-201ENST00000421999 SNX14Q9Y5W7 946 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 GRAPQ13588 217 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 CT47A1Q5JQC4 288 aaPredicted RBP11.28□□□□□ -0.6
CMSS1-201ENST00000421999 GRAPLQ8TC17 118 aaPredicted RBP11.28□□□□□ -0.6
CMSS1-201ENST00000421999 PI4K2BQ8TCG2 481 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 TBC1D22AQ8WUA7 517 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 ZKSCAN3Q9BRR0 538 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 ANKRD26Q9UPS8 1709 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 ZYXQ15942 572 aaKnown RBP11.28□□□□□ -0.6
CMSS1-201ENST00000421999 PPP4R3BQ5MIZ7 849 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 DHX32Q7L7V1 743 aaKnown RBP11.28□□□□□ -0.6
CMSS1-201ENST00000421999 CEP131Q9UPN4 1083 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 SAMM50Q9Y512 469 aa11.28□□□□□ -0.6
CMSS1-201ENST00000421999 CARMIL3Q8ND23 1372 aa11.27□□□□□ -0.6
CMSS1-201ENST00000421999 DTNBO60941 627 aa11.27□□□□□ -0.6
CMSS1-201ENST00000421999 MATR3P43243 847 aaKnown RBP eCLIP11.27□□□□□ -0.64e-7■■■■■ 27.8
CMSS1-201ENST00000421999 B4E1Z4 1266 aa11.27□□□□□ -0.61
CMSS1-201ENST00000421999 APOBRQ0VD83 1088 aa11.27□□□□□ -0.61
CMSS1-201ENST00000421999 STIM1Q13586 685 aa11.27□□□□□ -0.61
CMSS1-201ENST00000421999 RTN1Q16799 776 aa11.27□□□□□ -0.61
CMSS1-201ENST00000421999 RUFY3Q7L099 469 aa11.27□□□□□ -0.61
CMSS1-201ENST00000421999 EHMT1Q9H9B1 1298 aa11.27□□□□□ -0.61
CMSS1-201ENST00000421999 SETD1AO15047 1707 aaKnown RBP11.27□□□□□ -0.61
CMSS1-201ENST00000421999 NWD1Q149M9 1564 aa11.27□□□□□ -0.61
CMSS1-201ENST00000421999 CNTNAP4Q9C0A0 1308 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms