RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 ZNF395Q9H8N7 513 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-207ENST00000419472 ABI2Q9NYB9 513 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-207ENST00000419472 PDE8AO60658 829 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 RAB27AP51159 221 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 LMNB2Q03252 620 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 MCL1Q07820 350 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 TTBK2Q6IQ55 1244 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 BTLAQ7Z6A9 289 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 LSRQ86X29 649 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-207ENST00000419472 NIM1KQ8IY84 436 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 CHAC2Q8WUX2 184 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 SALL4Q9UJQ4 1053 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 PCDHB5Q9Y5E4 795 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 FHAD1B1AJZ9 1412 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 TRPA1O75762 1119 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 ACPPP15309 386 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 FXNQ16595 210 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 KIAA0319Q5VV43 1072 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 ANKRD13DQ6ZTN6 518 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 RHBDD1Q8TEB9 315 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 APBA2Q99767 749 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 UBA5Q9GZZ9 404 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 PLAAQ9Y263 795 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 XYLBO75191 536 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 ZFYVE27Q5T4F4 411 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 RC3H1Q5TC82 1133 aaKnown RBP6.63□□□□□ -1.35
VPS13A-207ENST00000419472 CYB5RLQ6IPT4 315 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 CCSAPQ6IQ19 270 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-207ENST00000419472 JARID2Q92833 1246 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-207ENST00000419472 CRBNQ96SW2 442 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 METTL12A8MUP2 240 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 FAM153BP0C7A2 387 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 PHKA2P46019 1235 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 CLCQ05315 142 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 C4orf17Q53FE4 359 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 CT47A1Q5JQC4 288 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-207ENST00000419472 RASIP1Q5U651 963 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 THSD4Q6ZMP0 1018 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 RNF180Q86T96 592 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 MFSD3Q96ES6 412 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 SMAD5Q99717 465 aaKnown RBP6.63□□□□□ -1.35
VPS13A-207ENST00000419472 BRMS1Q9HCU9 246 aa6.63□□□□□ -1.35
VPS13A-207ENST00000419472 ARHGEF11O15085 1522 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 RELBQ01201 579 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 AGMOQ6ZNB7 445 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 SV2BQ7L1I2 683 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 TEX2Q8IWB9 1127 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 ARNT2Q9HBZ2 717 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 ZIM2Q9NZV7 527 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 GRIN2AQ12879 1464 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 TMEM238LA0A1B0GVL6 79 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 TRIM42Q8IWZ5 723 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 NLRP3Q96P20 1036 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 MAF1Q9H063 256 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 PPM1HQ9ULR3 514 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 SHROOM2Q13796 1616 aa6.62□□□□□ -1.35
VPS13A-207ENST00000419472 A0A0U1RQG5 324 aaPredicted RBP6.61□□□□□ -1.35
VPS13A-207ENST00000419472 KIF3BO15066 747 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 ATF3P18847 181 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 EPHB1P54762 984 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 NINJ1Q92982 152 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 TCF12Q99081 682 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 ASPSCR1Q9BZE9 553 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 IL21Q9HBE4 155 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 PPP4R2Q9NY27 417 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 TRAK1Q9UPV9 953 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 COMMD10Q9Y6G5 202 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 NUP160Q12769 1436 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 SIAH2O43255 324 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 PRPF3O43395 683 aaKnown RBP6.61□□□□□ -1.35
VPS13A-207ENST00000419472 RLBP1P12271 317 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 GUCY2FP51841 1108 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 DHX8Q14562 1220 aaKnown RBP6.61□□□□□ -1.35
VPS13A-207ENST00000419472 IER5Q5VY09 327 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 PPP4R4Q6NUP7 873 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 MAMSTRQ6ZN01 415 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 STRA8Q7Z7C7 330 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 ARPC5LQ9BPX5 153 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 ANTXR1Q9H6X2 564 aa6.61□□□□□ -1.35
VPS13A-207ENST00000419472 GNL3LQ9NVN8 582 aaKnown RBP6.61□□□□□ -1.35
VPS13A-207ENST00000419472 GRIA4P48058 902 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 C10orf62Q5T681 223 aaPredicted RBP6.6□□□□□ -1.35
VPS13A-207ENST00000419472 LRRC69Q6ZNQ3 347 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 CAAP1Q9H8G2 361 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 LIN7BQ9HAP6 207 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 DZANK1Q9NVP4 752 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 PGPEP1Q9NXJ5 209 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 ZNRF3Q9ULT6 936 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 KIF27Q86VH2 1401 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 FAM221AA4D161 298 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 WDHD1O75717 1129 aaPredicted RBP6.6□□□□□ -1.35
VPS13A-207ENST00000419472 KRT18P05783 430 aaKnown RBP6.6□□□□□ -1.35
VPS13A-207ENST00000419472 NR5A1Q13285 461 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 PABPC4Q13310 644 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS13A-207ENST00000419472 NBPF10Q6P3W6 841 aaKnown RBP6.6□□□□□ -1.35
VPS13A-207ENST00000419472 MYO1HQ8N1T3 1032 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 NME8Q8N427 588 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 CNTNAP3BQ96NU0 1288 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 CNTNAP3Q9BZ76 1288 aa6.6□□□□□ -1.35
VPS13A-207ENST00000419472 CCDC8Q9H0W5 538 aaPredicted RBP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms