RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 PARP3Q9Y6F1 533 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 SLC39A6Q13433 755 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 EDC4Q6P2E9 1401 aaKnown RBP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 ANXA1P04083 346 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 SMTNP53814 917 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 SV2BQ7L1I2 683 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 DDX23Q9BUQ8 820 aaKnown RBP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 MAK16Q9BXY0 300 aaKnown RBP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 LRRC2Q9BYS8 371 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 MRVI1Q9Y6F6 885 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 DKC1O60832 514 aaKnown RBP eCLIP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 PARP1P09874 1014 aaKnown RBP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 HAUS3Q68CZ6 603 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 CNNM4Q6P4Q7 775 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 ACSBG1Q96GR2 724 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 DDX21Q9NR30 783 aaKnown RBP eCLIP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 LUC7L2Q9Y383 392 aaKnown RBP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 ABCA5Q8WWZ7 1642 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 SLU7O95391 586 aaKnown RBP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 PTGS1P23219 599 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 RAB3GAP1Q15042 981 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 MTHFSDQ2M296 383 aaKnown RBP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 VWA3BQ502W6 1294 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 PKNOX2Q96KN3 472 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 MTRF1LQ9UGC7 380 aaKnown RBP6.15□□□□□ -1.43
VPS13C-204ENST00000395898 MAST3O60307 1309 aa6.15□□□□□ -1.43
VPS13C-204ENST00000395898 F8W031 263 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 DEXIO95424 95 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 HOXB7P09629 217 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 SLC8A3P57103 927 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 IP6K1Q92551 441 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ZBTB40Q9NUA8 1239 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ODF2LQ9ULJ1 636 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ATP6V0A2Q9Y487 856 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 EPB41P11171 864 aaKnown RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 LMOD1P29536 600 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ATP5DP30049 168 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 SNX16P57768 344 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 GABPB2Q8TAK5 448 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 NUP153P49790 1475 aaKnown RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 A6NNZ2 444 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 TUBB8Q3ZCM7 444 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 CCDC50Q8IVM0 306 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 VTI1AQ96AJ9 217 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ZMYM4Q5VZL5 1548 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 MCM6Q14566 821 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 PUM3Q15397 648 aaKnown RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 CCDC26Q8TAB7 109 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 RBM17Q96I25 401 aaKnown RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ARHGEF10LQ9HCE6 1279 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 TMOD4Q9NZQ9 345 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ZKSCAN5Q9Y2L8 839 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 POLD1P28340 1107 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 TUBB2AQ13885 445 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 CCDC129Q6ZRS4 1044 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 SMC5Q8IY18 1101 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 JARID2Q92833 1246 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 TUBB2BQ9BVA1 445 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 DNAJC25Q9H1X3 360 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ZSWIM4Q9H7M6 989 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 CLCN1P35523 988 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 CLUL1Q15846 466 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ZNF790Q6PG37 636 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 RAB11FIP4Q86YS3 637 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 CDAN1Q8IWY9 1227 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 ARFGAP2Q8N6H7 521 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 PLBD2Q8NHP8 589 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 SMC6Q96SB8 1091 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 HAUS2Q9NVX0 235 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 PTPDC1A2A3K4 754 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 PLEKHM2Q8IWE5 1019 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 CFAP57Q96MR6 1250 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 PAIP2Q9BPZ3 127 aaKnown RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 NUP58Q9BVL2 599 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 MAP7D1Q3KQU3 841 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 GPR161Q8N6U8 529 aaKnown RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-204ENST00000395898 C8orf37Q96NL8 207 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 TFCP2L1Q9NZI6 479 aa6.14□□□□□ -1.43
VPS13C-204ENST00000395898 A0A1W2PP64 1363 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 PLCB3Q01970 1234 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 HOOK2Q96ED9 719 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 TIGD1Q96MW7 591 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 IBTKQ9P2D0 1353 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-204ENST00000395898 NDC80O14777 642 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 RNMTO43148 476 aaKnown RBP6.13□□□□□ -1.43
VPS13C-204ENST00000395898 CHMLP26374 656 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 GTF2F1P35269 517 aaKnown RBP eCLIP6.13□□□□□ -1.43
VPS13C-204ENST00000395898 TFCP2Q12800 502 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 CCDC6Q16204 474 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 CCDC186Q7Z3E2 898 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 FNBP1Q96RU3 617 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 VEZTQ9HBM0 779 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 CCNT1O60563 726 aaKnown RBP6.13□□□□□ -1.43
VPS13C-204ENST00000395898 TNNC1P63316 161 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 APOBRQ0VD83 1088 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 NBPF14Q5TI25 921 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 C16orf71Q8IYS4 520 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-204ENST00000395898 WDR66Q8TBY9 1149 aa6.13□□□□□ -1.43
VPS13C-204ENST00000395898 AOX1Q06278 1338 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms