RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 GNG11P61952 73 aa16.04■□□□□ 0.16
SDC1-202ENST00000381150 ZSCAN26Q16670 478 aa16.04■□□□□ 0.16
SDC1-202ENST00000381150 USPL1Q5W0Q7 1092 aa16.04■□□□□ 0.16
SDC1-202ENST00000381150 NEK1Q96PY6 1258 aa16.04■□□□□ 0.16
SDC1-202ENST00000381150 KIF2AO00139 706 aaPredicted RBP16.03■□□□□ 0.16
SDC1-202ENST00000381150 APOBRQ0VD83 1088 aa16.03■□□□□ 0.16
SDC1-202ENST00000381150 ARMCX5Q6P1M9 558 aa16.03■□□□□ 0.16
SDC1-202ENST00000381150 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.03■□□□□ 0.16
SDC1-202ENST00000381150 NHSL1Q5SYE7 1610 aa16.02■□□□□ 0.16
SDC1-202ENST00000381150 HAUS7Q99871 368 aa16.02■□□□□ 0.16
SDC1-202ENST00000381150 ALDH8A1Q9H2A2 487 aaPredicted RBP16.02■□□□□ 0.16
SDC1-202ENST00000381150 CWC25Q9NXE8 425 aaPredicted RBP16.02■□□□□ 0.16
SDC1-202ENST00000381150 ATP1A3P13637 1013 aa16.02■□□□□ 0.16
SDC1-202ENST00000381150 SMC1AQ14683 1233 aaKnown RBP16.02■□□□□ 0.16
SDC1-202ENST00000381150 RASSF4Q9H2L5 321 aa16.02■□□□□ 0.16
SDC1-202ENST00000381150 RESTQ13127 1097 aa16.02■□□□□ 0.15
SDC1-202ENST00000381150 LCMT1Q9UIC8 334 aa16.02■□□□□ 0.15
SDC1-202ENST00000381150 SLFNL1Q499Z3 407 aa16.01■□□□□ 0.15
SDC1-202ENST00000381150 RFX7Q2KHR2 1363 aa16.01■□□□□ 0.15
SDC1-202ENST00000381150 ZNF609O15014 1411 aa16.01■□□□□ 0.15
SDC1-202ENST00000381150 IRX3P78415 501 aaPredicted RBP16.01■□□□□ 0.15
SDC1-202ENST00000381150 CDC25BP30305 580 aa16■□□□□ 0.15
SDC1-202ENST00000381150 KARSQ15046 597 aaKnown RBP16■□□□□ 0.15
SDC1-202ENST00000381150 TXLNBQ8N3L3 684 aa16■□□□□ 0.15
SDC1-202ENST00000381150 KDM4FA0A1W2PPD8 638 aa16■□□□□ 0.15
SDC1-202ENST00000381150 CTAGE5O15320 804 aa16■□□□□ 0.15
SDC1-202ENST00000381150 CAVIN2O95810 425 aa16■□□□□ 0.15
SDC1-202ENST00000381150 H2AFXP16104 143 aaPredicted RBP16■□□□□ 0.15
SDC1-202ENST00000381150 ETF1P62495 437 aaKnown RBP16■□□□□ 0.15
SDC1-202ENST00000381150 ZBTB3Q9H5J0 574 aa16■□□□□ 0.15
SDC1-202ENST00000381150 STRN4Q9NRL3 753 aa16■□□□□ 0.15
SDC1-202ENST00000381150 ORC3Q9UBD5 711 aaPredicted RBP16■□□□□ 0.15
SDC1-202ENST00000381150 PTPDC1A2A3K4 754 aa16■□□□□ 0.15
SDC1-202ENST00000381150 MARCKSP29966 332 aaPredicted RBP16■□□□□ 0.15
SDC1-202ENST00000381150 FAM160A1Q05DH4 1040 aa16■□□□□ 0.15
SDC1-202ENST00000381150 SCRN1Q12765 414 aa16■□□□□ 0.15
SDC1-202ENST00000381150 DDX46Q7L014 1031 aaKnown RBP16■□□□□ 0.15
SDC1-202ENST00000381150 ISCA1Q9BUE6 129 aa16■□□□□ 0.15
SDC1-202ENST00000381150 GPR108Q9NPR9 543 aa16■□□□□ 0.15
SDC1-202ENST00000381150 SLC3A2P08195 630 aaKnown RBP15.99■□□□□ 0.15
SDC1-202ENST00000381150 NDUFA8P51970 172 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 VPS18Q9P253 973 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 PUF60Q9UHX1 559 aaKnown RBP15.99■□□□□ 0.15
SDC1-202ENST00000381150 SARM1Q6SZW1 724 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 NBPF11Q86T75 865 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 CREBRFQ8IUR6 639 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 ZNF396Q96N95 335 aaPredicted RBP15.99■□□□□ 0.15
SDC1-202ENST00000381150 PLEKHA4Q9H4M7 779 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 GJB4Q9NTQ9 266 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 UBASH3AP57075 661 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 AK7Q96M32 723 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 ZSCAN16Q9H4T2 348 aaPredicted RBP15.99■□□□□ 0.15
SDC1-202ENST00000381150 ARFGAP3Q9NP61 516 aa15.99■□□□□ 0.15
SDC1-202ENST00000381150 CCDC150Q8NCX0 1101 aa15.98■□□□□ 0.15
SDC1-202ENST00000381150 MRPS27Q92552 414 aaKnown RBP15.98■□□□□ 0.15
SDC1-202ENST00000381150 ATG3Q9NT62 314 aa15.98■□□□□ 0.15
SDC1-202ENST00000381150 HMG20BQ9P0W2 317 aa15.98■□□□□ 0.15
SDC1-202ENST00000381150 MYO1CO00159 1063 aa15.98■□□□□ 0.15
SDC1-202ENST00000381150 TIMM10P62072 90 aa15.98■□□□□ 0.15
SDC1-202ENST00000381150 LRRC24Q50LG9 513 aa15.98■□□□□ 0.15
SDC1-202ENST00000381150 AEBP2Q6ZN18 517 aaPredicted RBP15.98■□□□□ 0.15
SDC1-202ENST00000381150 CASQ1P31415 396 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 DESI2Q9BSY9 194 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 RNF216Q9NWF9 866 aaPredicted RBP15.97■□□□□ 0.15
SDC1-202ENST00000381150 ITGB4P16144 1822 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 SASH3O75995 380 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 WWC2Q6AWC2 1192 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 LEKR1Q6ZMV7 388 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 RBM43Q6ZSC3 357 aaKnown RBP15.97■□□□□ 0.15
SDC1-202ENST00000381150 KBTBD3Q8NAB2 608 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 ZNF594Q96JF6 807 aaPredicted RBP15.97■□□□□ 0.15
SDC1-202ENST00000381150 CWC15Q9P013 229 aaKnown RBP15.97■□□□□ 0.15
SDC1-202ENST00000381150 PCDHA7Q9UN72 937 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 TOP1P11387 765 aaKnown RBP15.97■□□□□ 0.15
SDC1-202ENST00000381150 IL15P40933 162 aaPredicted RBP15.97■□□□□ 0.15
SDC1-202ENST00000381150 EVA1CP58658 441 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 FANCCQ00597 558 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 TRIM28Q13263 835 aaKnown RBP15.97■□□□□ 0.15
SDC1-202ENST00000381150 TCIRG1Q13488 830 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 PIGBQ92521 554 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 CCDC102AQ96A19 550 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 ASAP1Q9ULH1 1129 aa15.97■□□□□ 0.15
SDC1-202ENST00000381150 PALLDQ8WX93 1383 aa15.96■□□□□ 0.15
SDC1-202ENST00000381150 EYA2O00167 538 aa15.96■□□□□ 0.15
SDC1-202ENST00000381150 SYNE3Q6ZMZ3 975 aa15.96■□□□□ 0.15
SDC1-202ENST00000381150 CPLX3Q8WVH0 158 aa15.96■□□□□ 0.15
SDC1-202ENST00000381150 NEUROD6Q96NK8 337 aa15.96■□□□□ 0.15
SDC1-202ENST00000381150 CIAO1O76071 339 aa15.96■□□□□ 0.15
SDC1-202ENST00000381150 MCMDC2Q4G0Z9 681 aa15.96■□□□□ 0.15
SDC1-202ENST00000381150 TSPYL1Q9H0U9 437 aa15.96■□□□□ 0.15
SDC1-202ENST00000381150 PUS3Q9BZE2 481 aaKnown RBP15.95■□□□□ 0.14
SDC1-202ENST00000381150 GPATCH11Q8N954 259 aa15.95■□□□□ 0.14
SDC1-202ENST00000381150 CCDC12Q8WUD4 166 aaPredicted RBP15.95■□□□□ 0.14
SDC1-202ENST00000381150 LZTFL1Q9NQ48 299 aa15.95■□□□□ 0.14
SDC1-202ENST00000381150 TMOD3Q9NYL9 352 aa15.95■□□□□ 0.14
SDC1-202ENST00000381150 SH3TC1Q8TE82 1336 aa15.95■□□□□ 0.14
SDC1-202ENST00000381150 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.95■□□□□ 0.14
SDC1-202ENST00000381150 TULP2O00295 520 aa15.95■□□□□ 0.14
SDC1-202ENST00000381150 GTF2A1P52655 376 aaPredicted RBP15.95■□□□□ 0.14
SDC1-202ENST00000381150 DPF2Q92785 391 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms