RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 A0A0D9SFI3 127 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 TRIM6-TRIM34B2RNG4 842 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 G3V3G9 751 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 GLRX3O76003 335 aaKnown RBP4.9□□□□□ -1.62
LIG4-201ENST00000356922 CACNB3P54284 484 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 DYNLL1P63167 89 aaKnown RBP4.9□□□□□ -1.62
LIG4-201ENST00000356922 NBPF9Q3BBW0 867 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 RBM26Q5T8P6 1007 aaKnown RBP4.9□□□□□ -1.62
LIG4-201ENST00000356922 DCAF8Q5TAQ9 597 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 RSBN1LQ6PCB5 846 aaPredicted RBP4.9□□□□□ -1.62
LIG4-201ENST00000356922 ZNF589Q86UQ0 364 aaPredicted RBP4.9□□□□□ -1.62
LIG4-201ENST00000356922 CDAN1Q8IWY9 1227 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 MIGA1Q8NAN2 632 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 SUPT20HQ8NEM7 779 aa4.9□□□□□ -1.62
LIG4-201ENST00000356922 FMR1Q06787 632 aaKnown RBP eCLIP4.9□□□□□ -1.63
LIG4-201ENST00000356922 SLC9C2Q5TAH2 1124 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 VPS53Q5VIR6 699 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 CIAPIN1Q6FI81 312 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 ZFPM1Q8IX07 1006 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 MAGEB6Q8N7X4 407 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 NKX2-3Q8TAU0 364 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 TRPM4Q8TD43 1214 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 FOXD4L1Q9NU39 408 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 DENND2AQ9ULE3 1009 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 TTF2Q9UNY4 1162 aaKnown RBP4.9□□□□□ -1.63
LIG4-201ENST00000356922 DICER1Q9UPY3 1922 aaKnown RBP4.9□□□□□ -1.63
LIG4-201ENST00000356922 PRKAB2O43741 272 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 UQCRFS1P1P0C7P4 283 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 GRIPAP1Q4V328 841 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 APOBEC3HQ6NTF7 200 aaKnown RBP4.9□□□□□ -1.63
LIG4-201ENST00000356922 KBTBD3Q8NAB2 608 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.9□□□□□ -1.63
LIG4-201ENST00000356922 NMRK2Q9NPI5 230 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 LRP2BPQ9P2M1 347 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 ZNF532Q9HCE3 1301 aa4.9□□□□□ -1.63
LIG4-201ENST00000356922 MKI67P46013 3256 aaKnown RBP4.89□□□□□ -1.63
LIG4-201ENST00000356922 M0R2C6 588 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 PDE6AP16499 860 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 TBC1D10BQ4KMP7 808 aaPredicted RBP4.89□□□□□ -1.63
LIG4-201ENST00000356922 VPS33BQ9H267 617 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 CNOT7Q9UIV1 285 aaKnown RBP4.89□□□□□ -1.63
LIG4-201ENST00000356922 TAF6LQ9Y6J9 622 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 GLTPD2A6NH11 291 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 CHMLP26374 656 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 NFIAQ12857 509 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 BMP2KLQ5H9B9 411 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 PRAMEF18Q5VWM3 479 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 CWC27Q6UX04 472 aaKnown RBP4.89□□□□□ -1.63
LIG4-201ENST00000356922 MICALL2Q8IY33 904 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 RAI14Q9P0K7 980 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 SALL1Q9NSC2 1324 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 WNT10BO00744 389 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 ADD2P35612 726 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 RHBDL3P58872 404 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 NMIQ13287 307 aaPredicted RBP4.89□□□□□ -1.63
LIG4-201ENST00000356922 GPC2Q8N158 579 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 RIOK1Q9BRS2 568 aaKnown RBP4.89□□□□□ -1.63
LIG4-201ENST00000356922 GNL3LQ9NVN8 582 aaKnown RBP4.89□□□□□ -1.63
LIG4-201ENST00000356922 AATFQ9NY61 560 aaKnown RBP eCLIP4.89□□□□□ -1.63
LIG4-201ENST00000356922 DAGLAQ9Y4D2 1042 aa4.89□□□□□ -1.63
LIG4-201ENST00000356922 TIAM2Q8IVF5 1701 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 SEMA3EO15041 775 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 ERC2O15083 957 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 LDHBP07195 334 aaKnown RBP4.88□□□□□ -1.63
LIG4-201ENST00000356922 SLC4A8Q2Y0W8 1093 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 C8orf34Q49A92 452 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 LCORLQ8N3X6 602 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 WDR66Q8TBY9 1149 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 EVI5LQ96CN4 794 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 ZBED3Q96IU2 234 aaPredicted RBP4.88□□□□□ -1.63
LIG4-201ENST00000356922 FSD1Q9BTV5 496 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 TDRD3Q9H7E2 651 aaKnown RBP4.88□□□□□ -1.63
LIG4-201ENST00000356922 RRAGCQ9HB90 399 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 DDX4Q9NQI0 724 aaKnown RBP4.88□□□□□ -1.63
LIG4-201ENST00000356922 GPRC5DQ9NZD1 345 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 FZD1Q9UP38 647 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 TACC3Q9Y6A5 838 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 PSME4Q14997 1843 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 CLRN2A0PK11 232 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 USP17L8P0C7I0 530 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 CYP7A1P22680 504 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 CRKP46108 304 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 EIF6P56537 245 aaKnown RBP4.88□□□□□ -1.63
LIG4-201ENST00000356922 PTH1RQ03431 593 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 SH3RF3Q8TEJ3 882 aaPredicted RBP4.88□□□□□ -1.63
LIG4-201ENST00000356922 ARMT1Q9H993 441 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 INCENPQ9NQS7 918 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 POLR2AP24928 1970 aaKnown RBP4.88□□□□□ -1.63
LIG4-201ENST00000356922 ZBTB22O15209 634 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 CFAP100Q494V2 611 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 SDR42E1Q8WUS8 393 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 MYOZ2Q9NPC6 264 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 MAST3O60307 1309 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 PDS5AQ29RF7 1337 aaKnown RBP4.88□□□□□ -1.63
LIG4-201ENST00000356922 DOCK2Q92608 1830 aa4.88□□□□□ -1.63
LIG4-201ENST00000356922 CYP2D7A0A087X1C5 515 aa4.87□□□□□ -1.63
LIG4-201ENST00000356922 RNF113AO15541 343 aaKnown RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 WDHD1O75717 1129 aaPredicted RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 ZNF280AP59817 542 aaPredicted RBP4.87□□□□□ -1.63
LIG4-201ENST00000356922 ZMYM1Q5SVZ6 1142 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms