RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 C17orf53Q8N3J3 647 aaPredicted RBP25.45■■□□□ 1.66
SHMT1-202ENST00000352886 NKX2-3Q8TAU0 364 aa25.45■■□□□ 1.66
SHMT1-202ENST00000352886 CTAGE5O15320 804 aa25.44■■□□□ 1.66
SHMT1-202ENST00000352886 FBXO18Q8NFZ0 1043 aa25.44■■□□□ 1.66
SHMT1-202ENST00000352886 TDRD7Q8NHU6 1098 aaKnown RBP25.44■■□□□ 1.66
SHMT1-202ENST00000352886 TPM3P06753 285 aa25.44■■□□□ 1.66
SHMT1-202ENST00000352886 AIDAQ96BJ3 306 aa25.44■■□□□ 1.66
SHMT1-202ENST00000352886 KCNF1Q9H3M0 494 aa25.44■■□□□ 1.66
SHMT1-202ENST00000352886 CCDC87Q9NVE4 849 aa25.44■■□□□ 1.66
SHMT1-202ENST00000352886 RTEL1Q9NZ71 1219 aa25.44■■□□□ 1.66
SHMT1-202ENST00000352886 ANGEL1Q9UNK9 670 aaKnown RBP25.44■■□□□ 1.66
SHMT1-202ENST00000352886 SNAP23O00161 211 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 POLR3DP05423 398 aaPredicted RBP25.43■■□□□ 1.66
SHMT1-202ENST00000352886 SLC5A1P13866 664 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 FAM160A1Q05DH4 1040 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 CYB5R4Q7L1T6 521 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 FSIP1Q8NA03 581 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 SPATA5Q8NB90 893 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 ENGASEQ8NFI3 743 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 MPHOSPH8Q99549 860 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 GJB4Q9NTQ9 266 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 KINO60870 393 aaKnown RBP25.43■■□□□ 1.66
SHMT1-202ENST00000352886 ATP6V1AP38606 617 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 CRKLP46109 303 aaKnown RBP25.43■■□□□ 1.66
SHMT1-202ENST00000352886 DNTTIP2Q5QJE6 756 aaKnown RBP25.43■■□□□ 1.66
SHMT1-202ENST00000352886 ACSBG1Q96GR2 724 aa25.43■■□□□ 1.66
SHMT1-202ENST00000352886 STRBPQ96SI9 672 aaKnown RBP25.43■■□□□ 1.66
SHMT1-202ENST00000352886 CAVIN2O95810 425 aa25.42■■□□□ 1.66
SHMT1-202ENST00000352886 UTP14AQ9BVJ6 771 aaKnown RBP25.42■■□□□ 1.66
SHMT1-202ENST00000352886 SEC31BQ9NQW1 1179 aa25.42■■□□□ 1.66
SHMT1-202ENST00000352886 PCDHA7Q9UN72 937 aa25.42■■□□□ 1.66
SHMT1-202ENST00000352886 RASGRF1Q13972 1273 aa25.42■■□□□ 1.66
SHMT1-202ENST00000352886 DDB1Q16531 1140 aa25.42■■□□□ 1.66
SHMT1-202ENST00000352886 DOCK2Q92608 1830 aa25.41■■□□□ 1.66
SHMT1-202ENST00000352886 PHLPP1O60346 1717 aa25.41■■□□□ 1.66
SHMT1-202ENST00000352886 UQCRHLA0A096LP55 91 aa25.41■■□□□ 1.66
SHMT1-202ENST00000352886 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.41■■□□□ 1.66
SHMT1-202ENST00000352886 UQCRHP07919 91 aa25.41■■□□□ 1.66
SHMT1-202ENST00000352886 AHDC1Q5TGY3 1603 aaPredicted RBP25.41■■□□□ 1.66
SHMT1-202ENST00000352886 B4E1Z4 1266 aa25.41■■□□□ 1.66
SHMT1-202ENST00000352886 TRIM5Q9C035 493 aa25.41■■□□□ 1.66
SHMT1-202ENST00000352886 CLIC4Q9Y696 253 aa25.41■■□□□ 1.66
SHMT1-202ENST00000352886 ZMYM6O95789 1325 aa25.4■■□□□ 1.66
SHMT1-202ENST00000352886 SH2B2O14492 632 aaPredicted RBP25.4■■□□□ 1.66
SHMT1-202ENST00000352886 MAGEB6Q8N7X4 407 aa25.4■■□□□ 1.66
SHMT1-202ENST00000352886 LINC00301Q8NCQ3 95 aa25.4■■□□□ 1.66
SHMT1-202ENST00000352886 CDCA7Q9BWT1 371 aaPredicted RBP25.4■■□□□ 1.66
SHMT1-202ENST00000352886 CHD4Q14839 1912 aa25.4■■□□□ 1.66
SHMT1-202ENST00000352886 ADALQ6DHV7 355 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 MRPS27Q92552 414 aaKnown RBP25.39■■□□□ 1.66
SHMT1-202ENST00000352886 NEDD4P46934 1319 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 ADAMTS2O95450 1211 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 METAP2P50579 478 aaKnown RBP eCLIP25.39■■□□□ 1.66
SHMT1-202ENST00000352886 MAP3K12Q12852 859 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 STK38Q15208 465 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 STX1AQ16623 288 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 C11orf57Q6ZUT1 292 aaPredicted RBP25.39■■□□□ 1.66
SHMT1-202ENST00000352886 BRAPQ7Z569 592 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 PLA2G4DQ86XP0 818 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 SPTLC3Q9NUV7 552 aa25.39■■□□□ 1.66
SHMT1-202ENST00000352886 MYH14Q7Z406 1995 aaKnown RBP25.39■■□□□ 1.65
SHMT1-202ENST00000352886 SPATA31A1Q5TZJ5 1347 aa25.39■■□□□ 1.65
SHMT1-202ENST00000352886 LOC102724428A0A0B4J2F2 783 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 CAMTA2O94983 1202 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 RXRAP19793 462 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 ZNF75DP51815 510 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 SIK1P57059 783 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 MYSM1Q5VVJ2 828 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 PYCARDQ9ULZ3 195 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 SF3A1Q15459 793 aaKnown RBP25.38■■□□□ 1.65
SHMT1-202ENST00000352886 KIAA1524Q8TCG1 905 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 POLR3EQ9NVU0 708 aa25.38■■□□□ 1.65
SHMT1-202ENST00000352886 KIF28PB7ZC32 967 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 MBD4O95243 580 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 PTGS1P23219 599 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 APOA5Q6Q788 366 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 FMR1NBQ8N0W7 255 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-202ENST00000352886 SENP2Q9HC62 589 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 EPB41L4AQ9HCS5 686 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-202ENST00000352886 A0A1B0GVL5 298 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 PATL2C9JE40 543 aaKnown RBP25.37■■□□□ 1.65
SHMT1-202ENST00000352886 IQCB1Q15051 598 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 CCDC152Q4G0S7 254 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 DRC7Q8IY82 874 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 KCNG4Q8TDN1 519 aa25.37■■□□□ 1.65
SHMT1-202ENST00000352886 A0A1W2PQ27 194 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 A0A1W2PQ64 194 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 A0A1W2PQD8 194 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 YEATS4O95619 227 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 KIF23Q02241 960 aaPredicted RBP25.36■■□□□ 1.65
SHMT1-202ENST00000352886 ITPK1Q13572 414 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 ALX1Q15699 326 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 PARP10Q53GL7 1025 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 IFNL3Q8IZI9 196 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 TMEM87BQ96K49 555 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 NAPBQ9H115 298 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 INCENPQ9NQS7 918 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 GOLGA6L19H0YKK7 550 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 MICU3Q86XE3 530 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 AIFM3Q96NN9 605 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms