RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 ZNF532Q9HCE3 1301 aa25.85■■□□□ 1.73
UPF3A-201ENST00000351487 TCRBV5S4A2TA0A5A2 114 aa25.85■■□□□ 1.73
UPF3A-201ENST00000351487 IDH1O75874 414 aaKnown RBP25.85■■□□□ 1.73
UPF3A-201ENST00000351487 PDE6AP16499 860 aa25.85■■□□□ 1.73
UPF3A-201ENST00000351487 SPC24Q8NBT2 197 aa25.85■■□□□ 1.73
UPF3A-201ENST00000351487 ROBO1Q9Y6N7 1651 aa25.85■■□□□ 1.73
UPF3A-201ENST00000351487 LAMB2P55268 1798 aa25.85■■□□□ 1.73
UPF3A-201ENST00000351487 ME1P48163 572 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 BRAPQ7Z569 592 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 TBC1D10CQ8IV04 446 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 A0A1W2PQ27 194 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 A0A1W2PQ64 194 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 A0A1W2PQD8 194 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 CPLX1O14810 134 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 KINO60870 393 aaKnown RBP25.84■■□□□ 1.73
UPF3A-201ENST00000351487 EIF5P55010 431 aaKnown RBP25.84■■□□□ 1.73
UPF3A-201ENST00000351487 STX1AQ16623 288 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 POLR3EQ9NVU0 708 aa25.84■■□□□ 1.73
UPF3A-201ENST00000351487 ANGEL1Q9UNK9 670 aaKnown RBP25.84■■□□□ 1.73
UPF3A-201ENST00000351487 ZNF75DP51815 510 aa25.83■■□□□ 1.73
UPF3A-201ENST00000351487 ADALQ6DHV7 355 aa25.83■■□□□ 1.73
UPF3A-201ENST00000351487 YEATS4O95619 227 aa25.83■■□□□ 1.72
UPF3A-201ENST00000351487 HSP90AA2PQ14568 343 aaPredicted RBP25.83■■□□□ 1.72
UPF3A-201ENST00000351487 IQCB1Q15051 598 aa25.83■■□□□ 1.72
UPF3A-201ENST00000351487 FSIP1Q8NA03 581 aa25.83■■□□□ 1.72
UPF3A-201ENST00000351487 LINC00301Q8NCQ3 95 aa25.83■■□□□ 1.72
UPF3A-201ENST00000351487 PCDHA7Q9UN72 937 aa25.83■■□□□ 1.72
UPF3A-201ENST00000351487 ALX1Q15699 326 aa25.82■■□□□ 1.72
UPF3A-201ENST00000351487 MRPS27Q92552 414 aaKnown RBP25.82■■□□□ 1.72
UPF3A-201ENST00000351487 WWC3Q9ULE0 1092 aa25.82■■□□□ 1.72
UPF3A-201ENST00000351487 TIAM2Q8IVF5 1701 aa25.82■■□□□ 1.72
UPF3A-201ENST00000351487 ECM29Q5VYK3 1845 aa25.82■■□□□ 1.72
UPF3A-201ENST00000351487 KCNG4Q8TDN1 519 aa25.82■■□□□ 1.72
UPF3A-201ENST00000351487 SH2B2O14492 632 aaPredicted RBP25.81■■□□□ 1.72
UPF3A-201ENST00000351487 DYNC1I1O14576 645 aa25.81■■□□□ 1.72
UPF3A-201ENST00000351487 OTUD7BQ6GQQ9 843 aa25.81■■□□□ 1.72
UPF3A-201ENST00000351487 SARM1Q6SZW1 724 aa25.81■■□□□ 1.72
UPF3A-201ENST00000351487 C17orf53Q8N3J3 647 aaPredicted RBP25.81■■□□□ 1.72
UPF3A-201ENST00000351487 STRBPQ96SI9 672 aaKnown RBP25.81■■□□□ 1.72
UPF3A-201ENST00000351487 SLC5A1P13866 664 aa25.8■■□□□ 1.72
UPF3A-201ENST00000351487 DNTTIP2Q5QJE6 756 aaKnown RBP25.8■■□□□ 1.72
UPF3A-201ENST00000351487 MYSM1Q5VVJ2 828 aa25.8■■□□□ 1.72
UPF3A-201ENST00000351487 CYB5R4Q7L1T6 521 aa25.8■■□□□ 1.72
UPF3A-201ENST00000351487 FMR1NBQ8N0W7 255 aaPredicted RBP25.8■■□□□ 1.72
UPF3A-201ENST00000351487 PRIMPOLQ96LW4 560 aa25.8■■□□□ 1.72
UPF3A-201ENST00000351487 CDCA7Q9BWT1 371 aaPredicted RBP25.8■■□□□ 1.72
UPF3A-201ENST00000351487 TRIM5Q9C035 493 aa25.8■■□□□ 1.72
UPF3A-201ENST00000351487 PYCARDQ9ULZ3 195 aa25.8■■□□□ 1.72
UPF3A-201ENST00000351487 NRAPQ86VF7 1730 aa25.8■■□□□ 1.72
UPF3A-201ENST00000351487 C11orf57Q6ZUT1 292 aaPredicted RBP25.8■■□□□ 1.72
UPF3A-201ENST00000351487 TMEM87BQ96K49 555 aa25.8■■□□□ 1.72
UPF3A-201ENST00000351487 CDC25BP30305 580 aa25.79■■□□□ 1.72
UPF3A-201ENST00000351487 SUSD4Q5VX71 490 aa25.79■■□□□ 1.72
UPF3A-201ENST00000351487 INTS5Q6P9B9 1019 aaKnown RBP25.79■■□□□ 1.72
UPF3A-201ENST00000351487 SPATA5Q8NB90 893 aa25.79■■□□□ 1.72
UPF3A-201ENST00000351487 DENND2AQ9ULE3 1009 aa25.79■■□□□ 1.72
UPF3A-201ENST00000351487 PTGS1P23219 599 aa25.79■■□□□ 1.72
UPF3A-201ENST00000351487 AIDAQ96BJ3 306 aa25.79■■□□□ 1.72
UPF3A-201ENST00000351487 CCDC87Q9NVE4 849 aa25.79■■□□□ 1.72
UPF3A-201ENST00000351487 RTL9Q8NET4 1388 aa25.78■■□□□ 1.72
UPF3A-201ENST00000351487 APPP05067 770 aa25.78■■□□□ 1.72
UPF3A-201ENST00000351487 KIF23Q02241 960 aaPredicted RBP25.78■■□□□ 1.72
UPF3A-201ENST00000351487 STK38Q15208 465 aa25.78■■□□□ 1.72
UPF3A-201ENST00000351487 RAB11FIP4Q86YS3 637 aa25.78■■□□□ 1.72
UPF3A-201ENST00000351487 ANO10Q9NW15 660 aa25.78■■□□□ 1.72
UPF3A-201ENST00000351487 CLIC4Q9Y696 253 aa25.78■■□□□ 1.72
UPF3A-201ENST00000351487 CDKL5O76039 1030 aa25.78■■□□□ 1.72
UPF3A-201ENST00000351487 NKX2-3Q8TAU0 364 aa25.78■■□□□ 1.72
UPF3A-201ENST00000351487 METAP2P50579 478 aaKnown RBP eCLIP25.77■■□□□ 1.72
UPF3A-201ENST00000351487 RASGRF1Q13972 1273 aa25.77■■□□□ 1.72
UPF3A-201ENST00000351487 APOA5Q6Q788 366 aa25.77■■□□□ 1.72
UPF3A-201ENST00000351487 MYRIPQ8NFW9 859 aa25.77■■□□□ 1.72
UPF3A-201ENST00000351487 HELBQ8NG08 1087 aaPredicted RBP25.77■■□□□ 1.72
UPF3A-201ENST00000351487 GOLGA6L19H0YKK7 550 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 POLR3DP05423 398 aaPredicted RBP25.76■■□□□ 1.71
UPF3A-201ENST00000351487 PARP10Q53GL7 1025 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 UTP14AQ9BVJ6 771 aaKnown RBP25.76■■□□□ 1.71
UPF3A-201ENST00000351487 BCORQ6W2J9 1755 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 MYH14Q7Z406 1995 aaKnown RBP25.76■■□□□ 1.71
UPF3A-201ENST00000351487 NEDD4P46934 1319 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 B4E1Z4 1266 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 KIF28PB7ZC32 967 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 SPTLC2O15270 562 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 MAP3K12Q12852 859 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 SGMS1Q86VZ5 419 aa25.76■■□□□ 1.71
UPF3A-201ENST00000351487 PATL2C9JE40 543 aaKnown RBP25.75■■□□□ 1.71
UPF3A-201ENST00000351487 CCDC186Q7Z3E2 898 aa25.75■■□□□ 1.71
UPF3A-201ENST00000351487 IGDCC4Q8TDY8 1250 aa25.75■■□□□ 1.71
UPF3A-201ENST00000351487 MPHOSPH8Q99549 860 aa25.75■■□□□ 1.71
UPF3A-201ENST00000351487 EPB41L4AQ9HCS5 686 aaPredicted RBP25.75■■□□□ 1.71
UPF3A-201ENST00000351487 CAMTA2O94983 1202 aa25.75■■□□□ 1.71
UPF3A-201ENST00000351487 CRKLP46109 303 aaKnown RBP25.75■■□□□ 1.71
UPF3A-201ENST00000351487 GJB4Q9NTQ9 266 aa25.75■■□□□ 1.71
UPF3A-201ENST00000351487 SF3A1Q15459 793 aaKnown RBP25.74■■□□□ 1.71
UPF3A-201ENST00000351487 THRAP3Q9Y2W1 955 aaKnown RBP25.74■■□□□ 1.71
UPF3A-201ENST00000351487 NDUFA8P51970 172 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 ANO1Q5XXA6 986 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 CPLX2Q6PUV4 134 aaKnown RBP25.73■■□□□ 1.71
UPF3A-201ENST00000351487 SYNE3Q6ZMZ3 975 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 DRC7Q8IY82 874 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms