RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ATP10DQ9P241 1426 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 STMN1P16949 149 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 RPUSD2Q8IZ73 545 aaKnown RBP5.91□□□□□ -1.46
SCN1A-201ENST00000303395 KCTD17Q8N5Z5 321 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 CCDC113Q9H0I3 377 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 PXDNLA1KZ92 1463 aa5.91□□□□□ -1.46
SCN1A-201ENST00000303395 UQCRFS1P1P0C7P4 283 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 MSL1Q68DK7 614 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 TAOK1Q7L7X3 1001 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 AFAP1L1Q8TED9 768 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 ATP5HO75947 161 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 PAK2Q13177 524 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 SETDB1Q15047 1291 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 C10orf76Q5T2E6 689 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 TESK2Q96S53 571 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 NCAPD2Q15021 1401 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 ABCC4O15439 1325 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 PSMA7O14818 248 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 MYCNP04198 464 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-201ENST00000303395 NEDD9Q14511 834 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 GALNT17Q6IS24 598 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 IFT20Q8IY31 132 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 SYCE1Q8N0S2 351 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 OTUD6BQ8N6M0 293 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 PIP4K2CQ8TBX8 421 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 TMX3Q96JJ7 454 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 VCX3AQ9NNX9 186 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 SAMD15Q9P1V8 674 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 MAP2K2P36507 400 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 EIF3BP55884 814 aaKnown RBP5.9□□□□□ -1.46
SCN1A-201ENST00000303395 FLIIQ13045 1269 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 CUL4AQ13619 759 aa5.9□□□□□ -1.46
SCN1A-201ENST00000303395 THOC1Q96FV9 657 aaKnown RBP5.9□□□□□ -1.46
SCN1A-201ENST00000303395 ACTN4O43707 911 aaKnown RBP5.9□□□□□ -1.47
SCN1A-201ENST00000303395 PRPF6O94906 941 aaKnown RBP5.9□□□□□ -1.47
SCN1A-201ENST00000303395 CAPN2P17655 700 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 FAM96AQ9H5X1 160 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 RIOK3O14730 519 aaKnown RBP5.9□□□□□ -1.47
SCN1A-201ENST00000303395 MAP4K4O95819 1239 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-201ENST00000303395 EIF2S2P20042 333 aaKnown RBP5.9□□□□□ -1.47
SCN1A-201ENST00000303395 PSMD7P51665 324 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 ETF1P62495 437 aaKnown RBP5.9□□□□□ -1.47
SCN1A-201ENST00000303395 EMBQ6PCB8 327 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 TMEM57Q8N5G2 664 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 MPHOSPH6Q99547 160 aaKnown RBP5.9□□□□□ -1.47
SCN1A-201ENST00000303395 LZTS2Q9BRK4 669 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 STK26Q9P289 416 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 TRIM35Q9UPQ4 493 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 PREX2Q70Z35 1606 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 ZNF76P36508 570 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 LMAN1P49257 510 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 ALS2CLQ60I27 953 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 BBOF1Q8ND07 529 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 TCP11Q8WWU5 503 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 FLT4P35916 1363 aa5.9□□□□□ -1.47
SCN1A-201ENST00000303395 CCDC160A6NGH7 325 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 HDGFL1Q5TGJ6 251 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 CCDC170Q8IYT3 715 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 GABPB2Q8TAK5 448 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 ZHX1Q9UKY1 873 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 SOS2Q07890 1332 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 CDC42BPAQ5VT25 1732 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 GNA14O95837 355 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 RAB3IPQ96QF0 476 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 STAP2Q9UGK3 403 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 MTMR7Q9Y216 660 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 A0A1B0GVL5 298 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 hCG_1984214I3L0E3 225 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 PRC1O43663 620 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 TCP1P17987 556 aaKnown RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 ERCC6LQ2NKX8 1250 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 CCDC26Q8TAB7 109 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 LEO1Q8WVC0 666 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 LMTK2Q8IWU2 1503 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 ANO9A1A5B4 782 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 SART1O43290 800 aaKnown RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 ATP8B2P98198 1209 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 XPCQ01831 940 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 ILF2Q12905 390 aaKnown RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 TRPC3Q13507 836 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 MMS22LQ6ZRQ5 1243 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 PSPC1Q8WXF1 523 aaKnown RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 GEMIN8Q9NWZ8 242 aaKnown RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 LMNAP02545 664 aaKnown RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 ACTN2P35609 894 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 PDE1AP54750 535 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 NR1H3Q13133 447 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 CCDC117Q8IWD4 279 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 ANTXR1Q9H6X2 564 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 SPC25Q9HBM1 224 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 HELLSQ9NRZ9 838 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 GOLGA6CA6NDK9 693 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 GOLGA6BA6NDN3 693 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 GOLGA6DP0CG33 693 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 TRAPPC10P48553 1259 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 DYNC1I2Q13409 638 aaKnown RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 SLC17A8Q8NDX2 589 aa5.89□□□□□ -1.47
SCN1A-201ENST00000303395 CTNNBL1Q8WYA6 563 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 SPATS2LQ9NUQ6 558 aaKnown RBP5.89□□□□□ -1.47
SCN1A-201ENST00000303395 GOLGA6AQ9NYA3 693 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms