RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 C4BP0C0L5 1744 aa23.51■■□□□ 1.35
VPS53-201ENST00000291074 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.5■■□□□ 1.35
VPS53-201ENST00000291074 SLC5A1P13866 664 aa23.5■■□□□ 1.35
VPS53-201ENST00000291074 COL4A1P02462 1669 aa23.5■■□□□ 1.35
VPS53-201ENST00000291074 CCAR1Q8IX12 1150 aaKnown RBP23.5■■□□□ 1.35
VPS53-201ENST00000291074 INCENPQ9NQS7 918 aa23.5■■□□□ 1.35
VPS53-201ENST00000291074 NIP7Q9Y221 180 aaKnown RBP eCLIP23.5■■□□□ 1.35
VPS53-201ENST00000291074 ORC3Q9UBD5 711 aaPredicted RBP23.49■■□□□ 1.35
VPS53-201ENST00000291074 DOCK2Q92608 1830 aa23.49■■□□□ 1.35
VPS53-201ENST00000291074 TRDNQ13061 729 aa23.49■■□□□ 1.35
VPS53-201ENST00000291074 MAGEB6Q8N7X4 407 aa23.49■■□□□ 1.35
VPS53-201ENST00000291074 AIDAQ96BJ3 306 aa23.49■■□□□ 1.35
VPS53-201ENST00000291074 AK7Q96M32 723 aa23.49■■□□□ 1.35
VPS53-201ENST00000291074 STRBPQ96SI9 672 aaKnown RBP23.49■■□□□ 1.35
VPS53-201ENST00000291074 CBX8Q9HC52 389 aa23.49■■□□□ 1.35
VPS53-201ENST00000291074 SENP2Q9HC62 589 aa23.49■■□□□ 1.35
VPS53-201ENST00000291074 RREB1Q92766 1687 aa23.48■■□□□ 1.35
VPS53-201ENST00000291074 B4E1Z4 1266 aa23.48■■□□□ 1.35
VPS53-201ENST00000291074 KCNQ2O43526 872 aa23.48■■□□□ 1.35
VPS53-201ENST00000291074 RXRAP19793 462 aa23.48■■□□□ 1.35
VPS53-201ENST00000291074 C8orf76Q96K31 380 aa23.48■■□□□ 1.35
VPS53-201ENST00000291074 ZNF396Q96N95 335 aaPredicted RBP23.48■■□□□ 1.35
VPS53-201ENST00000291074 NTSR2O95665 410 aa23.48■■□□□ 1.35
VPS53-201ENST00000291074 NEDD4P46934 1319 aa23.48■■□□□ 1.35
VPS53-201ENST00000291074 CPLX1O14810 134 aa23.47■■□□□ 1.35
VPS53-201ENST00000291074 THRAP3Q9Y2W1 955 aaKnown RBP23.47■■□□□ 1.35
VPS53-201ENST00000291074 MBD4O95243 580 aa23.47■■□□□ 1.35
VPS53-201ENST00000291074 DNAJC25Q9H1X3 360 aa23.47■■□□□ 1.35
VPS53-201ENST00000291074 EPB41L4AQ9HCS5 686 aaPredicted RBP23.47■■□□□ 1.35
VPS53-201ENST00000291074 CHD4Q14839 1912 aa23.47■■□□□ 1.35
VPS53-201ENST00000291074 POLR3DP05423 398 aaPredicted RBP23.46■■□□□ 1.35
VPS53-201ENST00000291074 ME1P48163 572 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 BCAMP50895 628 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 SASS6Q6UVJ0 657 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 SPC24Q8NBT2 197 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 CHMP4CQ96CF2 233 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 TAOK2Q9UL54 1235 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 R3HCC1Q9Y3T6 440 aaKnown RBP23.46■■□□□ 1.35
VPS53-201ENST00000291074 DHX16O60231 1041 aaKnown RBP23.46■■□□□ 1.35
VPS53-201ENST00000291074 KIAA2012Q0VF49 1180 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 PKNOX2Q96KN3 472 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 ARMT1Q9H993 441 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 ANGEL1Q9UNK9 670 aaKnown RBP23.46■■□□□ 1.35
VPS53-201ENST00000291074 WDR19Q8NEZ3 1342 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 SPATA31A5Q5VU36 1347 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 SPATA31A7Q8IWB4 1347 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 CCDC152Q4G0S7 254 aa23.46■■□□□ 1.35
VPS53-201ENST00000291074 TAF1P21675 1872 aa23.45■■□□□ 1.34
VPS53-201ENST00000291074 PARP10Q53GL7 1025 aa23.45■■□□□ 1.34
VPS53-201ENST00000291074 C17orf53Q8N3J3 647 aaPredicted RBP23.45■■□□□ 1.34
VPS53-201ENST00000291074 SH2B2O14492 632 aaPredicted RBP23.45■■□□□ 1.34
VPS53-201ENST00000291074 SNW1Q13573 536 aaKnown RBP23.45■■□□□ 1.34
VPS53-201ENST00000291074 FBXO18Q8NFZ0 1043 aa23.45■■□□□ 1.34
VPS53-201ENST00000291074 AIFM3Q96NN9 605 aa23.45■■□□□ 1.34
VPS53-201ENST00000291074 LAMB2P55268 1798 aa23.45■■□□□ 1.34
VPS53-201ENST00000291074 KCNQ4P56696 695 aa23.44■■□□□ 1.34
VPS53-201ENST00000291074 CTDSPL2Q05D32 466 aa23.44■■□□□ 1.34
VPS53-201ENST00000291074 MAP3K12Q12852 859 aa23.44■■□□□ 1.34
VPS53-201ENST00000291074 CCDC144CPQ8IYA2 1237 aa23.44■■□□□ 1.34
VPS53-201ENST00000291074 KIF28PB7ZC32 967 aa23.44■■□□□ 1.34
VPS53-201ENST00000291074 IGHMBP2P38935 993 aaKnown RBP23.44■■□□□ 1.34
VPS53-201ENST00000291074 FSIP1Q8NA03 581 aa23.44■■□□□ 1.34
VPS53-201ENST00000291074 IQSEC3Q9UPP2 1182 aaPredicted RBP23.44■■□□□ 1.34
VPS53-201ENST00000291074 CLIC4Q9Y696 253 aa23.44■■□□□ 1.34
VPS53-201ENST00000291074 TACC3Q9Y6A5 838 aa23.44■■□□□ 1.34
VPS53-201ENST00000291074 A0A087WWV3 80 aa23.43■■□□□ 1.34
VPS53-201ENST00000291074 PRKAB2O43741 272 aa23.43■■□□□ 1.34
VPS53-201ENST00000291074 ATL3Q6DD88 541 aa23.43■■□□□ 1.34
VPS53-201ENST00000291074 CCDC73Q6ZRK6 1079 aa23.43■■□□□ 1.34
VPS53-201ENST00000291074 IFNL3Q8IZI9 196 aa23.43■■□□□ 1.34
VPS53-201ENST00000291074 MICU3Q86XE3 530 aa23.43■■□□□ 1.34
VPS53-201ENST00000291074 PCDHA7Q9UN72 937 aa23.43■■□□□ 1.34
VPS53-201ENST00000291074 ECM29Q5VYK3 1845 aa23.43■■□□□ 1.34
VPS53-201ENST00000291074 ZMYM6O95789 1325 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 ZNF165P49910 485 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 METAP2P50579 478 aaKnown RBP eCLIP23.42■■□□□ 1.34
VPS53-201ENST00000291074 CHRNDQ07001 517 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 MYL10Q9BUA6 226 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 APOA5Q6Q788 366 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 SMIM5Q71RC9 77 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 ENGASEQ8NFI3 743 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 NAPBQ9H115 298 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 RTEL1Q9NZ71 1219 aa23.42■■□□□ 1.34
VPS53-201ENST00000291074 WTIPA6NIX2 430 aaPredicted RBP23.41■■□□□ 1.34
VPS53-201ENST00000291074 PATL2C9JE40 543 aaKnown RBP23.41■■□□□ 1.34
VPS53-201ENST00000291074 CDC27P30260 824 aa23.41■■□□□ 1.34
VPS53-201ENST00000291074 LCORLQ8N3X6 602 aa23.41■■□□□ 1.34
VPS53-201ENST00000291074 ERCC4Q92889 916 aaPredicted RBP23.41■■□□□ 1.34
VPS53-201ENST00000291074 COL5A3P25940 1745 aaPredicted RBP23.41■■□□□ 1.34
VPS53-201ENST00000291074 C3orf67Q6ZVT6 689 aa23.41■■□□□ 1.34
VPS53-201ENST00000291074 PHKBQ93100 1093 aa23.41■■□□□ 1.34
VPS53-201ENST00000291074 FAM160A1Q05DH4 1040 aa23.4■■□□□ 1.34
VPS53-201ENST00000291074 C11orf57Q6ZUT1 292 aaPredicted RBP23.4■■□□□ 1.34
VPS53-201ENST00000291074 MIGA1Q8NAN2 632 aa23.4■■□□□ 1.34
VPS53-201ENST00000291074 IGDCC4Q8TDY8 1250 aa23.4■■□□□ 1.34
VPS53-201ENST00000291074 KCNF1Q9H3M0 494 aa23.4■■□□□ 1.34
VPS53-201ENST00000291074 CICQ96RK0 1608 aaPredicted RBP23.4■■□□□ 1.34
VPS53-201ENST00000291074 GSG1L2A8MUP6 293 aa23.4■■□□□ 1.34
VPS53-201ENST00000291074 STK11IPQ8N1F8 1099 aa23.4■■□□□ 1.34
VPS53-201ENST00000291074 LINC00301Q8NCQ3 95 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms