RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MCM4P33991 863 aa19.6■□□□□ 0.73
USP4-201ENST00000265560 SLC4A4Q9Y6R1 1079 aa19.6■□□□□ 0.73
USP4-201ENST00000265560 CHRNA5P30532 468 aa19.59■□□□□ 0.73
USP4-201ENST00000265560 CTDSPL2Q05D32 466 aa19.59■□□□□ 0.73
USP4-201ENST00000265560 KRT32Q14532 448 aa19.59■□□□□ 0.73
USP4-201ENST00000265560 NBPF3Q9H094 633 aa19.59■□□□□ 0.73
USP4-201ENST00000265560 APOBRQ0VD83 1088 aa19.59■□□□□ 0.73
USP4-201ENST00000265560 SF3B2Q13435 895 aaKnown RBP19.59■□□□□ 0.73
USP4-201ENST00000265560 BRIP1Q9BX63 1249 aa19.59■□□□□ 0.73
USP4-201ENST00000265560 STK32BQ9NY57 414 aa19.59■□□□□ 0.73
USP4-201ENST00000265560 CIZ1Q9ULV3 898 aaPredicted RBP19.59■□□□□ 0.73
USP4-201ENST00000265560 SRGNP10124 158 aa19.58■□□□□ 0.73
USP4-201ENST00000265560 MYH13Q9UKX3 1938 aa19.58■□□□□ 0.73
USP4-201ENST00000265560 MECOMQ03112 1051 aa19.58■□□□□ 0.72
USP4-201ENST00000265560 TBC1D10CQ8IV04 446 aa19.58■□□□□ 0.72
USP4-201ENST00000265560 IFNL3Q8IZI9 196 aa19.58■□□□□ 0.72
USP4-201ENST00000265560 LAMA4Q16363 1823 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 GSG1L2A8MUP6 293 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 NAA16Q6N069 864 aaPredicted RBP19.57■□□□□ 0.72
USP4-201ENST00000265560 FLAD1Q8NFF5 587 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 GGA1Q9UJY5 639 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 PPEF1O14829 653 aaPredicted RBP19.57■□□□□ 0.72
USP4-201ENST00000265560 CCT2P78371 535 aaKnown RBP19.57■□□□□ 0.72
USP4-201ENST00000265560 EVX2Q03828 476 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 TPRNQ4KMQ1 711 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 DHX32Q7L7V1 743 aaKnown RBP19.57■□□□□ 0.72
USP4-201ENST00000265560 NAPBQ9H115 298 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 CWC22Q9HCG8 908 aaKnown RBP19.57■□□□□ 0.72
USP4-201ENST00000265560 AATFQ9NY61 560 aaKnown RBP eCLIP19.57■□□□□ 0.72
USP4-201ENST00000265560 CTNNA3Q9UI47 895 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 TAOK2Q9UL54 1235 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 ANKRD31Q8N7Z5 1873 aa19.57■□□□□ 0.72
USP4-201ENST00000265560 CYP2D7A0A087X1C5 515 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 GZF1Q9H116 711 aaPredicted RBP19.56■□□□□ 0.72
USP4-201ENST00000265560 BBOX1O75936 387 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 HOXA10P31260 410 aaPredicted RBP19.56■□□□□ 0.72
USP4-201ENST00000265560 TDO2P48775 406 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 DIXDC1Q155Q3 683 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 TBC1D16Q8TBP0 767 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 SMC3Q9UQE7 1217 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 IRS2Q9Y4H2 1338 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 FBXW7Q969H0 707 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 TOMM22Q9NS69 142 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 LEMD3Q9Y2U8 911 aa19.56■□□□□ 0.72
USP4-201ENST00000265560 MAGEB6P1A0A0J9YX57 407 aa19.55■□□□□ 0.72
USP4-201ENST00000265560 MINDY4BA8MYZ0 360 aa19.55■□□□□ 0.72
USP4-201ENST00000265560 PATL2C9JE40 543 aaKnown RBP19.55■□□□□ 0.72
USP4-201ENST00000265560 GJB2P29033 226 aa19.55■□□□□ 0.72
USP4-201ENST00000265560 RRP12Q5JTH9 1297 aaKnown RBP19.55■□□□□ 0.72
USP4-201ENST00000265560 NCOA5Q9HCD5 579 aaKnown RBP19.55■□□□□ 0.72
USP4-201ENST00000265560 TACC3Q9Y6A5 838 aa19.55■□□□□ 0.72
USP4-201ENST00000265560 NSUN4Q96CB9 384 aaKnown RBP19.55■□□□□ 0.72
USP4-201ENST00000265560 INTS4Q96HW7 963 aaKnown RBP19.55■□□□□ 0.72
USP4-201ENST00000265560 B4E1Z4 1266 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 CRAMP1Q96RY5 1269 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 KLRG2A4D1S0 409 aaPredicted RBP19.54■□□□□ 0.72
USP4-201ENST00000265560 FOSBP53539 338 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 MCTP1Q6DN14 999 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 C2CD5Q86YS7 1000 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 JAK2O60674 1132 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 BAG6P46379 1132 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 NUCB2P80303 420 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 DOK7Q18PE1 504 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 TICAM2Q86XR7 235 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 DDX11Q96FC9 970 aa19.54■□□□□ 0.72
USP4-201ENST00000265560 DOCK2Q92608 1830 aa19.53■□□□□ 0.72
USP4-201ENST00000265560 EXOSC10Q01780 885 aaKnown RBP19.53■□□□□ 0.72
USP4-201ENST00000265560 CD209Q9NNX6 404 aa19.53■□□□□ 0.72
USP4-201ENST00000265560 BAG4O95429 457 aaKnown RBP19.53■□□□□ 0.72
USP4-201ENST00000265560 RALYLQ86SE5 291 aaKnown RBP19.53■□□□□ 0.72
USP4-201ENST00000265560 NEDD4P46934 1319 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 PRC1O43663 620 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 ZNF804AQ7Z570 1209 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 DZIP1Q86YF9 867 aaKnown RBP19.52■□□□□ 0.72
USP4-201ENST00000265560 MXD3Q9BW11 206 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 SENP2Q9HC62 589 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 CACNA1SQ13698 1873 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 PDE6BP35913 854 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 ANTXR2P58335 489 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 CYB5R4Q7L1T6 521 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 ZSCAN31Q96LW9 406 aaPredicted RBP19.52■□□□□ 0.72
USP4-201ENST00000265560 ZKSCAN3Q9BRR0 538 aa19.52■□□□□ 0.72
USP4-201ENST00000265560 RIOK1Q9BRS2 568 aaKnown RBP19.52■□□□□ 0.72
USP4-201ENST00000265560 NPR1P16066 1061 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 RXRAP19793 462 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 SYT1P21579 422 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 TDRD7Q8NHU6 1098 aaKnown RBP19.51■□□□□ 0.71
USP4-201ENST00000265560 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.51■□□□□ 0.71
USP4-201ENST00000265560 BAZ2AQ9UIF9 1905 aaKnown RBP19.51■□□□□ 0.71
USP4-201ENST00000265560 F8W031 263 aaPredicted RBP19.51■□□□□ 0.71
USP4-201ENST00000265560 ANKRD1Q15327 319 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 SH2B1Q9NRF2 756 aaPredicted RBP19.51■□□□□ 0.71
USP4-201ENST00000265560 KDM4AO75164 1064 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 ATP2B4P23634 1241 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 NCOA7Q8NI08 942 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 GDPD2Q9HCC8 539 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 ATP6V0A2Q9Y487 856 aa19.51■□□□□ 0.71
USP4-201ENST00000265560 SCRN1Q12765 414 aa19.5■□□□□ 0.71
USP4-201ENST00000265560 GBP4Q96PP9 640 aa19.5■□□□□ 0.71
USP4-201ENST00000265560 VPS37CA5D8V6 355 aaPredicted RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms