RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ARRDC1Q8N5I2 433 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 FAM71E2Q8N5Q1 922 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 NPBQ8NG41 125 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 HARBI1Q96MB7 349 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 RNF5Q99942 180 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 SOSTQ9BQB4 213 aa14.34□□□□□ -0.11
CLN3-239ENST00000628023 A6NHS1 94 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 CRYZL1O95825 349 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 S100GP29377 79 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 CATR1Q13166 79 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 MEF2DQ14814 521 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 C5orf64Q2M2E5 130 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 AADACL3Q5VUY0 350 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 ZNF818PQ6ZRF7 136 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 FOXRED2Q8IWF2 684 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 CMTM1Q8IZ96 169 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 Q8N402 240 aa14.33□□□□□ -0.12
CLN3-239ENST00000628023 WNK1Q9H4A3 2382 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 RRHO14718 337 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 NDUFA3O95167 84 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 SPDEFO95238 335 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 CD74P04233 296 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 AKAIN1P0CW23 69 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 PGAM2P15259 253 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 PTBP1P26599 531 aaKnown RBP eCLIP14.32□□□□□ -0.12
CLN3-239ENST00000628023 RPL30P62888 115 aaKnown RBP14.32□□□□□ -0.12
CLN3-239ENST00000628023 SCGB2B2Q4G0G5 96 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 LPCAT3Q6P1A2 487 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 MFSD4AQ8N468 514 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 OR4D10Q8NGI6 311 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 OR4S2Q8NH73 311 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 DDB2Q92466 427 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 GPHA2Q96T91 129 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 THAP7Q9BT49 309 aaPredicted RBP14.32□□□□□ -0.12
CLN3-239ENST00000628023 FBXL15Q9H469 300 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 BATF3Q9NR55 127 aa14.32□□□□□ -0.12
CLN3-239ENST00000628023 METTL1Q9UBP6 276 aaKnown RBP14.32□□□□□ -0.12
CLN3-239ENST00000628023 DISC1C4P0D8 188 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 SLC25A17O43808 307 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 GNRHRP30968 328 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 KIR2DS2P43631 304 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 PSG5Q15238 335 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 ZNF79Q15937 498 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 CNPY1Q3B7I2 92 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 LIN54Q6MZP7 749 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 FAAP20Q6NZ36 180 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 SLC38A6Q8IZM9 456 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 POC5Q8NA72 575 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 OR51H1Q8NH63 302 aa14.31□□□□□ -0.12
CLN3-239ENST00000628023 GPR31O00270 319 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 IGHG2P01859 326 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 HLA-DRB1P01911 266 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 RLN1P04808 185 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 ETV6P41212 452 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 LGALS7P47929 136 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 PPP5CP53041 499 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 AP3S2P59780 193 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 EIF4EBP1Q13541 118 aaPredicted RBP14.3□□□□□ -0.12
CLN3-239ENST00000628023 PHLDA2Q53GA4 152 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 TMEM177Q53S58 311 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 CENPVQ7Z7K6 275 aaPredicted RBP14.3□□□□□ -0.12
CLN3-239ENST00000628023 OR4C16Q8NGL9 310 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 HSPB9Q9BQS6 159 aa14.3□□□□□ -0.12
CLN3-239ENST00000628023 ANKRD20A5PA0PJZ0 165 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 AP4M1O00189 453 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 VMA21Q3ZAQ7 101 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 C11orf44Q8N8P7 122 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 OSR1Q8TAX0 266 aaPredicted RBP14.29□□□□□ -0.12
CLN3-239ENST00000628023 ABHD5Q8WTS1 349 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 NOL4LQ96MY1 436 aaPredicted RBP14.29□□□□□ -0.12
CLN3-239ENST00000628023 CLCC1Q96S66 551 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 SRRQ9GZT4 340 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 PARP11Q9NR21 331 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 MCUBQ9NWR8 336 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 LINC00527Q9UJ94 153 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 VWFP04275 2813 aa14.29□□□□□ -0.12
CLN3-239ENST00000628023 TGP01266 2768 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 FBXO24O75426 580 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 FAUP35544 74 aaKnown RBP14.28□□□□□ -0.12
CLN3-239ENST00000628023 INPP1P49441 399 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 UCP3P55916 312 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 KRTAP10-3P60369 221 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 TRIQKQ629K1 86 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 SPAG16Q8N0X2 631 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 TOMM5Q8N4H5 51 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 CHPT1Q8WUD6 406 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 PRRT1Q99946 306 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 RSRP1Q9BUV0 290 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 WNT10AQ9GZT5 417 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 NOTCH1P46531 2555 aa14.28□□□□□ -0.12
CLN3-239ENST00000628023 PSMB11A5LHX3 300 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 LINC01548A6NM66 108 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 PGLYRP1O75594 196 aaPredicted RBP14.27□□□□□ -0.13
CLN3-239ENST00000628023 CA2P00918 260 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 IGLV2-23P01705 113 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 VDAC1P21796 283 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 GNB1P62873 340 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 SLC35B1P78383 322 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 LHFPL1Q86WI0 220 aa14.27□□□□□ -0.13
CLN3-239ENST00000628023 STPG2Q8N412 459 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms