RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 LIN7CQ9NUP9 197 aaKnown RBP10.61□□□□□ -0.71
LINC00540-202ENST00000616974 SULT1C2O00338 296 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 APELAP0DMC3 54 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 EGR2P11161 476 aaPredicted RBP10.6□□□□□ -0.71
LINC00540-202ENST00000616974 MYOD1P15172 320 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 RPA2P15927 270 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 RCVRNP35243 200 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 SHISA2Q6UWI4 295 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 SLC35E3Q7Z769 313 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 MFSD4AQ8N468 514 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 MOB3AQ96BX8 217 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 DGCR14Q96DF8 476 aaKnown RBP10.6□□□□□ -0.71
LINC00540-202ENST00000616974 HARBI1Q96MB7 349 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 RASL11BQ9BPW5 248 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 METTL1Q9UBP6 276 aaKnown RBP10.6□□□□□ -0.71
LINC00540-202ENST00000616974 A3GALT2U3KPV4 340 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 FABP12A6NFH5 140 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 GABARAPH6UMI1 98 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 M0QZK8 103 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 RLN1P04808 185 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 ZNF735P0CB33 412 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 NSUN5P1Q3KNT7 163 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 PHLDA2Q53GA4 152 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 CCDC190Q86UF4 302 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 STPG2Q8N412 459 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 TCTEX1D2Q8WW35 142 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 FCAMRQ8WWV6 532 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 FLYWCH2Q96CP2 140 aaKnown RBP10.6□□□□□ -0.71
LINC00540-202ENST00000616974 GHITMQ9H3K2 345 aa10.6□□□□□ -0.71
LINC00540-202ENST00000616974 ARPC1BO15143 372 aaKnown RBP10.59□□□□□ -0.71
LINC00540-202ENST00000616974 SOX15O60248 233 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 RBBP9O75884 186 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 CA2P00918 260 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 PPP5CP53041 499 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 TAS2R46P59540 309 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 CX3CL1P78423 397 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 C10orf55Q5SWW7 151 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 PYHIN1Q6K0P9 492 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 CENPVQ7Z7K6 275 aaPredicted RBP10.59□□□□□ -0.71
LINC00540-202ENST00000616974 PDPNQ86YL7 162 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 MMP27Q9H306 513 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 PARP11Q9NR21 331 aa10.59□□□□□ -0.71
LINC00540-202ENST00000616974 A6NHS1 94 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 APOA2P02652 100 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 CRYGBP07316 175 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 MC5RP33032 325 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 THBS3P49746 956 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 TSPAN5P62079 268 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 LIN54Q6MZP7 749 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 SSX9Q7RTT3 188 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 OR4C16Q8NGL9 310 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 OR6Q1Q8NGQ2 317 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 TRIM63Q969Q1 353 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 SDHCQ99643 169 aaPredicted RBP10.58□□□□□ -0.72
LINC00540-202ENST00000616974 SHOXO15266 292 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 FBXO24O75426 580 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 HLA-DRB1P01911 266 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 DEFA5Q01523 94 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 PLGLAQ15195 96 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 TMEM177Q53S58 311 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 C19orf35Q6ZS72 473 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 OR6F1Q8NGZ6 308 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 KLK15Q9H2R5 256 aa10.58□□□□□ -0.72
LINC00540-202ENST00000616974 TRAV3A0A0B4J244 114 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 E7EUB6 86 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 CD74P04233 296 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 SAA1P0DJI8 122 aaPredicted RBP10.57□□□□□ -0.72
LINC00540-202ENST00000616974 HERV-K104P61576 105 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 GNB1P62873 340 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 CFHR3Q02985 330 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 ECSCRQ19T08 205 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 SCGB2B2Q4G0G5 96 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 VAX1Q5SQQ9 334 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 STEAP1BQ6NZ63 245 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 LHFPL1Q86WI0 220 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 PSMB11A5LHX3 300 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 PGLYRP1O75594 196 aaPredicted RBP10.57□□□□□ -0.72
LINC00540-202ENST00000616974 S1PR2O95136 353 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 RPLP1P05386 114 aaKnown RBP10.57□□□□□ -0.72
LINC00540-202ENST00000616974 CD83Q01151 205 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 RNASE10Q5GAN6 216 aaKnown RBP10.57□□□□□ -0.72
LINC00540-202ENST00000616974 DUX3Q96PT4 197 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 OR51J1Q9H342 316 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 KIAA1456Q9P272 454 aa10.57□□□□□ -0.72
LINC00540-202ENST00000616974 A0A1B0GW64 132 aa10.56□□□□□ -0.72
LINC00540-202ENST00000616974 RAB3DO95716 219 aa10.56□□□□□ -0.72
LINC00540-202ENST00000616974 BAK1Q16611 211 aa10.56□□□□□ -0.72
LINC00540-202ENST00000616974 PYDC2Q56P42 97 aa10.56□□□□□ -0.72
LINC00540-202ENST00000616974 SPAG16Q8N0X2 631 aa10.56□□□□□ -0.72
LINC00540-202ENST00000616974 TMEM229BQ8NBD8 167 aa10.56□□□□□ -0.72
LINC00540-202ENST00000616974 OR8H1Q8NGG4 311 aa10.56□□□□□ -0.72
LINC00540-202ENST00000616974 GRPEL2Q8TAA5 225 aa10.56□□□□□ -0.72
LINC00540-202ENST00000616974 FAM110DQ8TAY7 271 aaPredicted RBP10.56□□□□□ -0.72
LINC00540-202ENST00000616974 CTDSPLO15194 276 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 OPN1MWP04001 364 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 OPN1MW2P0DN77 364 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 OPN1MW3P0DN78 364 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 RTL8BQ17RB0 113 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 CNPY1Q3B7I2 92 aa10.55□□□□□ -0.72
LINC00540-202ENST00000616974 ZNF585BQ52M93 769 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms