RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	ACOT12	Q8WYK0	555 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	C5orf30	Q96GV9	206 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	DCUN1D5	Q9BTE7	237 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ACOT13	Q9NPJ3	140 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	PEF1	Q9UBV8	284 aa	Known RBP	13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	DNAH7	Q8WXX0	4024 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	SMIM30	A4D0T7	59 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	SRRM4	A7MD48	611 aa	Known RBP	13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552		H3BUA1	57 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	PDCD5	O14737	125 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	CRYZL1	O95825	349 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	CRYGB	P07316	175 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TAGLN	Q01995	201 aa	Known RBP	13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	VMA21	Q3ZAQ7	101 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	OR9G4	Q8NGQ1	327 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TINAGL1	Q9GZM7	467 aa	Predicted RBP	13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TUBA4B	Q9H853	241 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TNC	P24821	2201 aa		13.44	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TENM2	Q9NT68	2774 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TRBV6-7	A0A0A0MS04	114 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	PRH1	P02810	166 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	MYL9	P24844	172 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	RANBP1	P43487	201 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	KLF5	Q13887	457 aa	Predicted RBP	13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TATDN3	Q17R31	274 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	RPEL1	Q2QD12	228 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	PRSS48	Q7RTY5	328 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ATG5	Q9H1Y0	275 aa		13.43	□□□□□ -0.26
SHKBP1-223	ENST00000600552		H0Y980	276 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	AADAC	P22760	399 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	CRHBP	P24387	322 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	DYRK1A	Q13627	763 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TMEM177	Q53S58	311 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	OR2B11	Q5JQS5	317 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	CNBD2	Q96M20	576 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	CITED4	Q96RK1	184 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	CABLES2	Q9BTV7	478 aa		13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ELF5	Q9UKW6	265 aa	Predicted RBP	13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	DYNC2H1	Q8NCM8	4307 aa	Known RBP	13.42	□□□□□ -0.26
SHKBP1-223	ENST00000600552	IGKV1D-8	A0A087WSZ0	117 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	METTL21EP	A6NDL7	271 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	RRAS	P10301	218 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	HIST1H1D	P16402	221 aa	Known RBP	13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	SSX1	Q16384	188 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	PRSS8	Q16651	343 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	IL34	Q6ZMJ4	242 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TMEM68	Q96MH6	324 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TM2D3	Q9BRN9	247 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ST6GALNAC5	Q9BVH7	336 aa		13.41	□□□□□ -0.26
SHKBP1-223	ENST00000600552	SHISA3	A0PJX4	238 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	IZUMO1R	A6ND01	250 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	IFITM5	A6NNB3	132 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	LINC00473	A8K010	186 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	RAB27B	O00194	218 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	MFNG	O00587	321 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	RBMXL2	O75526	392 aa	Known RBP	13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TUSC2	O75896	110 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ACTL6B	O94805	426 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	CSN3	P07498	182 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	OR9G9	P0C7N8	305 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	RAB3B	P20337	219 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	DUT	P33316	252 aa	Known RBP	13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	RHOG	P84095	191 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ZNF343	Q6P1L6	599 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ZNF367	Q7RTV3	350 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	GTSCR1	Q86UQ5	136 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	SRSF12	Q8WXF0	261 aa	Known RBP	13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	SNAPC3	Q92966	411 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ISOC1	Q96CN7	298 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	USMG5	Q96IX5	58 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	ADTRP	Q96IZ2	230 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	C19orf73	Q9NVV2	129 aa		13.4	□□□□□ -0.26
SHKBP1-223	ENST00000600552	FCGR3B	O75015	233 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	UBE2K	P61086	200 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	ATP5G2	Q06055	141 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	EXOSC2	Q13868	293 aa	Known RBP	13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	HAGH	Q16775	308 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	MRGPRG-AS1	Q2M3A8	158 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	CDNF	Q49AH0	187 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	C22orf42	Q6IC83	251 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	H1FOO	Q8IZA3	346 aa	Predicted RBP	13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	TEX45	Q8NA69	505 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	ADAD2	Q8NCV1	583 aa	Known RBP	13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	AKIP1	Q9NQ31	210 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	SELENOK	Q9Y6D0	94 aa		13.39	□□□□□ -0.27
SHKBP1-223	ENST00000600552	TRAV1-2	A0A0B4J238	106 aa		13.38	□□□□□ -0.27
SHKBP1-223	ENST00000600552	RAB6A	P20340	208 aa		13.38	□□□□□ -0.27
SHKBP1-223	ENST00000600552	NFYA	P23511	347 aa	Predicted RBP	13.38	□□□□□ -0.27
SHKBP1-223	ENST00000600552	C10orf55	Q5SWW7	151 aa		13.38	□□□□□ -0.27
SHKBP1-223	ENST00000600552	LCN12	Q6JVE5	192 aa		13.38	□□□□□ -0.27
SHKBP1-223	ENST00000600552	IZUMO2	Q6UXV1	221 aa		13.38	□□□□□ -0.27
SHKBP1-223	ENST00000600552	SPATA25	Q9BR10	227 aa		13.38	□□□□□ -0.27
SHKBP1-223	ENST00000600552	ZNF430	Q9H8G1	570 aa	Predicted RBP	13.38	□□□□□ -0.27
SHKBP1-223	ENST00000600552	OR2J3	O76001	311 aa		13.37	□□□□□ -0.27
SHKBP1-223	ENST00000600552	SAA1	P0DJI8	122 aa	Predicted RBP	13.37	□□□□□ -0.27
SHKBP1-223	ENST00000600552	VKORC1L1	Q8N0U8	176 aa		13.37	□□□□□ -0.27
SHKBP1-223	ENST00000600552	DDB2	Q92466	427 aa		13.37	□□□□□ -0.27
SHKBP1-223	ENST00000600552	PLEKHA3	Q9HB20	300 aa		13.37	□□□□□ -0.27
SHKBP1-223	ENST00000600552	RETN	Q9HD89	108 aa		13.37	□□□□□ -0.27
SHKBP1-223	ENST00000600552	PEMT	Q9UBM1	199 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 157.9 ms