RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 FGF20Q9NP95 211 aaPredicted RBP5.27□□□□□ -1.57
VPS53-213ENST00000572334 NIT2Q9NQR4 276 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 SMCO4Q9NRQ5 59 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 NUDT15Q9NV35 164 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 TAS2R8Q9NYW2 309 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 IL36GQ9NZH8 169 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 ABRACLQ9P1F3 81 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 AMMECR1Q9Y4X0 333 aaPredicted RBP5.27□□□□□ -1.57
VPS53-213ENST00000572334 LSM4Q9Y4Z0 139 aaKnown RBP5.27□□□□□ -1.57
VPS53-213ENST00000572334 SACSQ9NZJ4 4579 aa5.27□□□□□ -1.57
VPS53-213ENST00000572334 TENM2Q9NT68 2774 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 TNCP24821 2201 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 SERPINE3A8MV23 424 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 TSTD3H0UI37 97 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 UBE2CO00762 179 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 HSD17B6O14756 317 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 GEMIN2O14893 280 aaKnown RBP5.26□□□□□ -1.57
VPS53-213ENST00000572334 GSTZ1O43708 216 aaPredicted RBP5.26□□□□□ -1.57
VPS53-213ENST00000572334 RPLP1P05386 114 aaKnown RBP5.26□□□□□ -1.57
VPS53-213ENST00000572334 NMBP08949 121 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 RPA2P15927 270 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 IGFBP3P17936 291 aaPredicted RBP5.26□□□□□ -1.57
VPS53-213ENST00000572334 TGFBR1P36897 503 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 GPR12P47775 334 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 REG1BP48304 166 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 SOX2P48431 317 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 KCNJ3P48549 501 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 ZNF134P52741 427 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 ZNF137PP52743 207 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 RBM11P57052 281 aaKnown RBP5.26□□□□□ -1.57
VPS53-213ENST00000572334 RPS11P62280 158 aaKnown RBP eCLIP5.26□□□□□ -1.57
VPS53-213ENST00000572334 KIAA0141Q14154 515 aaPredicted RBP5.26□□□□□ -1.57
VPS53-213ENST00000572334 HES1Q14469 280 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 DEFB136Q30KP8 78 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 ASPHD1Q5U4P2 390 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 C22orf42Q6IC83 251 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 C5orf24Q7Z6I8 188 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 SLC35E3Q7Z769 313 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 LYPD6Q86Y78 171 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 TGIF2LXQ8IUE1 241 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 ZNF695Q8IW36 515 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 GAPTQ8N292 157 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 FAM71E2Q8N5Q1 922 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 KLHL30-AS1Q8NEE0 82 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 DMBX1Q8NFW5 382 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 OR51D1Q8NGF3 324 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 OR52M1Q8NGK5 317 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 OR13C5Q8NGS8 318 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 COQ8AQ8NI60 647 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 HAVCR2Q8TDQ0 301 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 PHYHIPQ92561 330 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 WWC2-AS2Q96NR7 200 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 PFDN5Q99471 154 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 HSPB9Q9BQS6 159 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 GSN-AS1Q9NRJ2 163 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 GFOD1Q9NXC2 390 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 COMMD9Q9P000 198 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 METTL1Q9UBP6 276 aaKnown RBP5.26□□□□□ -1.57
VPS53-213ENST00000572334 DHDHQ9UQ10 334 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 ST3GAL6Q9Y274 331 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 LSM2Q9Y333 95 aaKnown RBP5.26□□□□□ -1.57
VPS53-213ENST00000572334 STARD9Q9P2P6 4700 aa5.26□□□□□ -1.57
VPS53-213ENST00000572334 DNAH1Q9P2D7 4330 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 IGHV3-43A0A0B4J1X8 118 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 TRBV5-5A0A0J9YX44 114 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 MCRIP1C9JLW8 97 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 CCL24O00175 119 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 OGG1O15527 345 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 HPGDSO60760 199 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 CLN5O75503 358 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 MPC2O95563 127 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 MT-ND4P03905 459 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 GAPDHP04406 335 aaKnown RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 IGHV3-43DP0DP04 118 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 GZMHP20718 246 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 S100A2P29034 98 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 LUMP51884 338 aaPredicted RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 F2RL1P55085 397 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 SPCS3P61009 180 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 MXD1Q05195 221 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 CD69Q07108 199 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 OR2F1Q13607 317 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 FHL3Q13643 280 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 ZNF345Q14585 488 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 KIR2DS1Q14954 304 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 PEA15Q15121 130 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 RSU1Q15404 277 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 CT45A1Q5HYN5 189 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 OR2G6Q5TZ20 316 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 LIPKQ5VXJ0 399 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 IL34Q6ZMJ4 242 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 ZNF497Q6ZNH5 498 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 SLC25A48Q6ZT89 311 aaKnown RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 TMUB2Q71RG4 321 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 COMMD1Q8N668 190 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 C8orf31Q8N9H6 132 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 ZNF485Q8NCK3 441 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 OR11H7Q8NGC8 314 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 OR10X1Q8NGY0 326 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 CT45A3Q8NHU0 189 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms