RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 TNFSF12O43508 249 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 SLC25A17O43808 307 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 RBMXL2O75526 392 aaKnown RBP7.69□□□□□ -1.18
CLN3-220ENST00000566040 SPDEFO95238 335 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 IGHG4P01861 327 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 CD74P04233 296 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 IL6RP08887 468 aaPredicted RBP7.69□□□□□ -1.18
CLN3-220ENST00000566040 PSMB8P28062 276 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 RCVRNP35243 200 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 SOX6P35712 828 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 ARPC4P59998 168 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 CX3CL1P78423 397 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 OR2B11Q5JQS5 317 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 VAX1Q5SQQ9 334 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 NDUFA11Q86Y39 141 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 MINDY2Q8NBR6 621 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 SMIM4Q8WVI0 70 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 SECTM1Q8WVN6 248 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 TRIM63Q969Q1 353 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 RNF5Q99942 180 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 DCUN1D5Q9BTE7 237 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 FAM103A1Q9BTL3 118 aaKnown RBP7.69□□□□□ -1.18
CLN3-220ENST00000566040 KLK15Q9H2R5 256 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 IFT46Q9NQC8 304 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 TAS2R8Q9NYW2 309 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 RSL24D1Q9UHA3 163 aaKnown RBP7.69□□□□□ -1.18
CLN3-220ENST00000566040 NUBP2Q9Y5Y2 271 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 CGB1A6NKQ9 187 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 E7EUB6 86 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 H7C2Y5 167 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 CTDSPLO15194 276 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 CRYZL1O95825 349 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 CA2P00918 260 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 APOA2P02652 100 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 CD3DP04234 171 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 RPLP1P05386 114 aaKnown RBP7.68□□□□□ -1.18
CLN3-220ENST00000566040 SAA1P0DJI8 122 aaPredicted RBP7.68□□□□□ -1.18
CLN3-220ENST00000566040 MYOD1P15172 320 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 FXYD4P59646 89 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 RPL23AP62750 156 aaKnown RBP7.68□□□□□ -1.18
CLN3-220ENST00000566040 NSUN5P1Q3KNT7 163 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 ZNF585BQ52M93 769 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 FAAP20Q6NZ36 180 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 IDO2Q6ZQW0 420 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 KCTD9Q7L273 389 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 CCDC190Q86UF4 302 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 TMEM17Q86X19 198 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 VKORC1L1Q8N0U8 176 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 PUSL1Q8N0Z8 303 aaKnown RBP7.68□□□□□ -1.18
CLN3-220ENST00000566040 MFSD4AQ8N468 514 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 MCFD2Q8NI22 146 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 CHPT1Q8WUD6 406 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 HARBI1Q96MB7 349 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 RASL11BQ9BPW5 248 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 ZNF2Q9BSG1 426 aaPredicted RBP7.68□□□□□ -1.18
CLN3-220ENST00000566040 SLC5A7Q9GZV3 580 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 PARP11Q9NR21 331 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 METTL1Q9UBP6 276 aaKnown RBP7.68□□□□□ -1.18
CLN3-220ENST00000566040 WSB1Q9Y6I7 421 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 TGP01266 2768 aa7.68□□□□□ -1.18
CLN3-220ENST00000566040 A0A1W2PRX2 142 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 GABARAPH6UMI1 98 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 M0QZ24 198 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 RGS5O15539 181 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 KCNAB3O43448 404 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 GSTZ1O43708 216 aaPredicted RBP7.67□□□□□ -1.18
CLN3-220ENST00000566040 FCGR3BO75015 233 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 IGKV1-39P01597 117 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 IGKV1D-39P04432 117 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 TAS2R46P59540 309 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 UBE2KP61086 200 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 RPS16P62249 146 aaKnown RBP7.67□□□□□ -1.18
CLN3-220ENST00000566040 C2orf68Q2NKX9 166 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 C10orf55Q5SWW7 151 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 LIN54Q6MZP7 749 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 ZNF66Q6ZN08 573 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 OR5H2Q8NGV7 314 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 CASTOR1Q8WTX7 329 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 FLYWCH2Q96CP2 140 aaKnown RBP7.67□□□□□ -1.18
CLN3-220ENST00000566040 ADTRPQ96IZ2 230 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 CLCC1Q96S66 551 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 SDHCQ99643 169 aaPredicted RBP7.67□□□□□ -1.18
CLN3-220ENST00000566040 HSD17B10Q99714 261 aaKnown RBP7.67□□□□□ -1.18
CLN3-220ENST00000566040 RSRP1Q9BUV0 290 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 C6orf62Q9GZU0 229 aaPredicted RBP7.67□□□□□ -1.18
CLN3-220ENST00000566040 MMP27Q9H306 513 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 ZNF430Q9H8G1 570 aaPredicted RBP7.67□□□□□ -1.18
CLN3-220ENST00000566040 COL7A1Q02388 2944 aa7.67□□□□□ -1.18
CLN3-220ENST00000566040 TRAV3A0A0B4J244 114 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 TRAV41A0A0B4J266 112 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 CSF1P09603 554 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 FOXE3Q13461 319 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 POU2AF1Q16633 256 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 PRSS8Q16651 343 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 ARSJQ5FYB0 599 aaPredicted RBP7.66□□□□□ -1.18
CLN3-220ENST00000566040 ZNF562Q6V9R5 426 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 C19orf35Q6ZS72 473 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 CENPVQ7Z7K6 275 aaPredicted RBP7.66□□□□□ -1.18
CLN3-220ENST00000566040 PPP1R27Q86WC6 154 aa7.66□□□□□ -1.18
CLN3-220ENST00000566040 FOXRED2Q8IWF2 684 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms