RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 TAGLNQ01995 201 aaKnown RBP11.34□□□□□ -0.59
USP3-205ENST00000557884 SSBP1Q04837 148 aaKnown RBP11.34□□□□□ -0.59
USP3-205ENST00000557884 PSG5Q15238 335 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 ZNF79Q15937 498 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 SPANXN2Q5MJ10 180 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 SHISA2Q6UWI4 295 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 ZNF66Q6ZN08 573 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 MFSD4AQ8N468 514 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 CLCC1Q96S66 551 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 HSD17B10Q99714 261 aaKnown RBP11.34□□□□□ -0.59
USP3-205ENST00000557884 WNT10AQ9GZT5 417 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 TPSG1Q9NRR2 321 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 METTL1Q9UBP6 276 aaKnown RBP11.34□□□□□ -0.59
USP3-205ENST00000557884 ZNF107Q9UII5 783 aaPredicted RBP11.34□□□□□ -0.59
USP3-205ENST00000557884 PRELID3BQ9Y3B1 194 aa11.34□□□□□ -0.59
USP3-205ENST00000557884 SLC25A17O43808 307 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 IGHG2P01859 326 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 CD74P04233 296 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 CSF1P09603 554 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 PPP5CP53041 499 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 MSMO1Q15800 293 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 SCGB2B2Q4G0G5 96 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 PHLDA2Q53GA4 152 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 TMEM177Q53S58 311 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 CENPVQ7Z7K6 275 aaPredicted RBP11.33□□□□□ -0.6
USP3-205ENST00000557884 Q8N402 240 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 ZBTB34Q8NCN2 500 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 OR4C16Q8NGL9 310 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 OR51H1Q8NH63 302 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 RNF5Q99942 180 aa11.33□□□□□ -0.6
USP3-205ENST00000557884 THAP7Q9BT49 309 aaPredicted RBP11.33□□□□□ -0.6
USP3-205ENST00000557884 SRRM4A7MD48 611 aaKnown RBP11.32□□□□□ -0.6
USP3-205ENST00000557884 FCN1O00602 326 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 SPDEFO95238 335 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 IGLV2-23P01705 113 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 HLA-DRB1P01911 266 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 RLN1P04808 185 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 CD28P10747 220 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 PGAM2P15259 253 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 BRWD1-AS2P59051 145 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 CNPY1Q3B7I2 92 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 AADACL3Q5VUY0 350 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 LIN54Q6MZP7 749 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 C10orf99Q6UWK7 81 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 ZNF329Q86UD4 541 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 FOXRED2Q8IWF2 684 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 ARRDC1Q8N5I2 433 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 OR4S2Q8NH73 311 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 CITED1Q99966 193 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 PARP11Q9NR21 331 aa11.32□□□□□ -0.6
USP3-205ENST00000557884 CMYA5Q8N3K9 4069 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 IGHV7-81A0A0B4J1V7 117 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 ANKRD20A5PA0PJZ0 165 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 GPR31O00270 319 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 KCNAB3O43448 404 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 RAMP3O60896 148 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 PGLYRP1O75594 196 aaPredicted RBP11.31□□□□□ -0.6
USP3-205ENST00000557884 ZNF735P0CB33 412 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 AKAIN1P0CW23 69 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 ETV6P41212 452 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 LGALS7P47929 136 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 NDPQ00604 133 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 CATR1Q13166 79 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 MEF2DQ14814 521 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 CMTM1Q8IZ96 169 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 SPAG16Q8N0X2 631 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 OR5AU1Q8NGC0 362 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 WIPF2Q8TF74 440 aaPredicted RBP11.31□□□□□ -0.6
USP3-205ENST00000557884 BORCS5Q969J3 196 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 TRIM63Q969Q1 353 aa11.31□□□□□ -0.6
USP3-205ENST00000557884 PSMB11A5LHX3 300 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 DISC1C4P0D8 188 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 AP4M1O00189 453 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 FBXO24O75426 580 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 CA2P00918 260 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 PI3P19957 117 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 PTBP1P26599 531 aaKnown RBP eCLIP11.3□□□□□ -0.64e-8■■■■■ 64.1
USP3-205ENST00000557884 KIR2DS2P43631 304 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 GNB1P62873 340 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 PJVKQ0ZLH3 352 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 IDO2Q6ZQW0 420 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 LHFPL1Q86WI0 220 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 SLC38A6Q8IZM9 456 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 VKORC1L1Q8N0U8 176 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 STPG2Q8N412 459 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 OSR1Q8TAX0 266 aaPredicted RBP11.3□□□□□ -0.6
USP3-205ENST00000557884 ABHD5Q8WTS1 349 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 RSRP1Q9BUV0 290 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 SRRQ9GZT4 340 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 OR51J1Q9H342 316 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 WSB1Q9Y6I7 421 aa11.3□□□□□ -0.6
USP3-205ENST00000557884 ATP6V0E1O15342 81 aa11.29□□□□□ -0.6
USP3-205ENST00000557884 CRYGBP07316 175 aa11.29□□□□□ -0.6
USP3-205ENST00000557884 UCP3P55916 312 aa11.29□□□□□ -0.6
USP3-205ENST00000557884 UBE2KP61086 200 aa11.29□□□□□ -0.6
USP3-205ENST00000557884 CX3CL1P78423 397 aa11.29□□□□□ -0.6
USP3-205ENST00000557884 KLF9Q13886 244 aaPredicted RBP11.29□□□□□ -0.6
USP3-205ENST00000557884 VMA21Q3ZAQ7 101 aa11.29□□□□□ -0.6
USP3-205ENST00000557884 LPCAT3Q6P1A2 487 aa11.29□□□□□ -0.6
USP3-205ENST00000557884 POC5Q8NA72 575 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms