RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CTF1Q16619 201 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 CHRFAM7AQ494W8 412 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 SLC16A12Q6ZSM3 486 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 C5orf24Q7Z6I8 188 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 TGIF2LXQ8IUE1 241 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 KIR3DL3Q8N743 410 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 OR4D5Q8NGN0 318 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 RAB2BQ8WUD1 216 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 PTX4Q96A99 478 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 SLC25A46Q96AG3 418 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 NICN1Q9BSH3 213 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 TM2D2Q9BX73 214 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 TM2D1Q9BX74 207 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 PLEKHJ1Q9NW61 149 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF581Q9P0T4 197 aa4.15□□□□□ -1.75
CLIP1-217ENST00000543205 NSD1Q96L73 2696 aaPredicted RBP4.15□□□□□ -1.75
CLIP1-217ENST00000543205 MALRD1Q5VYJ5 2156 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 VPS13CQ709C8 3753 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 TMEM30CPA0ZSE6 113 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 ODAMA1E959 279 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SMCO3A2RU48 225 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 CCDC160A6NGH7 325 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 DIRC3C9JPN6 131 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 H0YIZ8 118 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 M0R1W7 72 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 GSTT2P0CG29 244 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 GSTT2BP0CG30 244 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF728P0DKX0 622 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 VEGFCP49767 419 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 RORCP51449 518 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 PLP1P60201 277 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SLC35E4Q6ICL7 350 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 Q6ZTK2 550 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 VMO1Q7Z5L0 202 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 OR11H4Q8NGC9 324 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 IL17DQ8TAD2 202 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 PLPPR1Q8TBJ4 325 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF714Q96N38 554 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 LPAR5Q9H1C0 372 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 ATG5Q9H1Y0 275 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 DCSTAMPQ9H295 470 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 METTL8Q9H825 291 aaKnown RBP4.14□□□□□ -1.75
CLIP1-217ENST00000543205 GNG12Q9UBI6 72 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 OPN4Q9UHM6 478 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 KIF25Q9UIL4 384 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 ETV7Q9Y603 341 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 LINC00312Q9Y6C7 94 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 ABCA1O95477 2261 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 YLPM1P49750 1951 aaKnown RBP4.14□□□□□ -1.75
CLIP1-217ENST00000543205 A0A0A6YYD4 124 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 TOR1AO14656 332 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SOCS1O15524 211 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 CRLF1O75462 422 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 CA11O75493 328 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SCGNO76038 276 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 CCL3L1P16619 93 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 GLP1RP43220 463 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 EFNB2P52799 333 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 EWSR1Q01844 656 aaKnown RBP eCLIP4.14□□□□□ -1.75
CLIP1-217ENST00000543205 GAGE2BQ13066 116 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 GAGE2EQ4V326 116 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 RSBN1Q5VWQ0 802 aaPredicted RBP4.14□□□□□ -1.75
CLIP1-217ENST00000543205 GAGE2AQ6NT46 116 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF497Q6ZNH5 498 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SSX9Q7RTT3 188 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 H2BFWTQ7Z2G1 175 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 C6orf201Q7Z4U5 140 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 FAM89BQ8N5H3 189 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 KLHDC1Q8N7A1 406 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 OR5AU1Q8NGC0 362 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 OR10R2Q8NGX6 335 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SPATA3Q8NHX4 192 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 LGALS14Q8TCE9 139 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 MRGPRDQ8TDS7 321 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 CCDC107Q8WV48 283 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 TMEM37Q8WXS4 190 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 AP3S1Q92572 193 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 UPRTQ96BW1 309 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 RAB3CQ96E17 227 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SGK494Q96LW2 274 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SULT4A1Q9BR01 284 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 FAAP24Q9BTP7 215 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SIRT7Q9NRC8 400 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 TECRQ9NZ01 308 aaKnown RBP4.14□□□□□ -1.75
CLIP1-217ENST00000543205 ABRACLQ9P1F3 81 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 GAGE2DQ9UEU5 116 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 TRAPPC2LQ9UL33 140 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 SPATA2Q9UM82 520 aa4.14□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV3OR16-10A0A075B7F0 116 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 TRAV40A0A0B4J280 105 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF729A6NN14 1252 aaPredicted RBP4.13□□□□□ -1.75
CLIP1-217ENST00000543205 C17orf98A8MV24 154 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 RBP4P02753 201 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 MT-ND4P03905 459 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 RD3LP0DJH9 198 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 GP9P14770 177 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 GZMHP20718 246 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 PRTN3P24158 256 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 ARPC4P59998 168 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 SPCS2Q15005 226 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms