RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 SLC25A38Q96DW6 304 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 CMTM3Q96MX0 182 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 IFT46Q9NQC8 304 aa12.72□□□□□ -0.37
LSM1-205ENST00000523511 CMYA5Q8N3K9 4069 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 TRIM64CA6NLI5 447 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 ARPC1BO15143 372 aaKnown RBP12.71□□□□□ -0.37
LSM1-205ENST00000523511 SSX5O60225 188 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 LINC00205P59089 165 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 UBE2KP61086 200 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 GNB1P62873 340 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 RUNX1Q01196 453 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 DCTN2Q13561 401 aaKnown RBP12.71□□□□□ -0.37
LSM1-205ENST00000523511 TMEM69Q5SWH9 247 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 KCTD9Q7L273 389 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 SAMD12Q8N8I0 201 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 ZBTB34Q8NCN2 500 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 LFNGQ8NES3 379 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 OR1N2Q8NGR9 330 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 MYOZ3Q8TDC0 251 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 FUNDC2Q9BWH2 189 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 KLK15Q9H2R5 256 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 ZNF355PQ9NSJ1 428 aa12.71□□□□□ -0.37
LSM1-205ENST00000523511 RBMX2Q9Y388 322 aaKnown RBP12.71□□□□□ -0.37
LSM1-205ENST00000523511 WNK1Q9H4A3 2382 aa12.71□□□□□ -0.38
LSM1-205ENST00000523511 A0A0G2JLM5 398 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 H3BUA1 57 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 RAMP3O60896 148 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 CRYZL1O95825 349 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 FCGR2CP31995 323 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 RORCP51449 518 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 ZNF616Q08AN1 781 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 MSMO1Q15800 293 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 C9orf66Q5T8R8 295 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 MZT2AQ6P582 158 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 ZNF66Q6ZN08 573 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 OR5AP2Q8NGF4 316 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 GRPEL2Q8TAA5 225 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 VSTM2AQ8TAG5 236 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 AP3S1Q92572 193 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 PHB2Q99623 299 aa12.7□□□□□ -0.38
LSM1-205ENST00000523511 FCGR3BO75015 233 aa12.69□□□□□ -0.38
LSM1-205ENST00000523511 EGR2P11161 476 aaPredicted RBP12.69□□□□□ -0.38
LSM1-205ENST00000523511 PRSS3P35030 304 aa12.69□□□□□ -0.38
LSM1-205ENST00000523511 KIR2DS2P43631 304 aa12.69□□□□□ -0.38
LSM1-205ENST00000523511 OR13F1Q8NGS4 319 aa12.69□□□□□ -0.38
LSM1-205ENST00000523511 OR4S2Q8NH73 311 aa12.69□□□□□ -0.38
LSM1-205ENST00000523511 TCTEX1D2Q8WW35 142 aa12.69□□□□□ -0.38
LSM1-205ENST00000523511 DDB2Q92466 427 aa12.69□□□□□ -0.38
LSM1-205ENST00000523511 DUX3Q96PT4 197 aa12.69□□□□□ -0.38
LSM1-205ENST00000523511 FAM103A1Q9BTL3 118 aaKnown RBP12.69□□□□□ -0.38
LSM1-205ENST00000523511 AURKAIP1Q9NWT8 199 aaPredicted RBP12.69□□□□□ -0.38
LSM1-205ENST00000523511 I3L521 148 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 HRASP01112 189 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 IGLV2-23P01705 113 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 PRB2P02812 416 aaPredicted RBP12.68□□□□□ -0.38
LSM1-205ENST00000523511 CRYGBP07316 175 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 AADACP22760 399 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 INSL3P51460 131 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 TPPP2P59282 170 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 NDPQ00604 133 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 CDK10Q15131 360 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 DEFB136Q30KP8 78 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 MFSD4AQ8N468 514 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 GVQW1Q8N7I0 195 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 GIMAP1Q8WWP7 306 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 MS4A10Q96PG2 267 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 COMMD3Q9UBI1 195 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 FBXO7Q9Y3I1 522 aa12.68□□□□□ -0.38
LSM1-205ENST00000523511 C13orf42A0A1B0GVH6 325 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 LINC00473A8K010 186 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 MPPED1O15442 326 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 PPYP01298 95 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 APOA1P02647 267 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 TRGV3P03979 118 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 LGALS1P09382 135 aaKnown RBP12.67□□□□□ -0.38
LSM1-205ENST00000523511 TGFBR1P36897 503 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 TAS2R46P59540 309 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 TAS2R20P59543 309 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 HERV-K104P61576 105 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 VBP1P61758 197 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 DGCR2P98153 550 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 EGFEM1PQ0D2K5 195 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 CATR1Q13166 79 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 KIAA0141Q14154 515 aaPredicted RBP12.67□□□□□ -0.38
LSM1-205ENST00000523511 C19orf54Q5BKX5 351 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 DEFB121Q5J5C9 76 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 OVCH2Q7RTZ1 564 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 MMD2Q8IY49 270 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 POC5Q8NA72 575 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 SECTM1Q8WVN6 248 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 OR5B12Q96R08 314 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 SPIN2AQ99865 258 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 SPIN2BQ9BPZ2 258 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 GNB4Q9HAV0 340 aa12.67□□□□□ -0.38
LSM1-205ENST00000523511 MSGN1A6NI15 193 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 SRRM4A7MD48 611 aaKnown RBP12.66□□□□□ -0.38
LSM1-205ENST00000523511 SEC14L6B5MCN3 397 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 LINC01619G3V211 115 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 HSPB1P04792 205 aaKnown RBP12.66□□□□□ -0.38
LSM1-205ENST00000523511 NCS1P62166 190 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms