RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 FAM3DQ96BQ1 224 aa9.42□□□□□ -0.9
CPSF3-204ENST00000489403 USMG5Q96IX5 58 aa9.42□□□□□ -0.9
CPSF3-204ENST00000489403 KRTAP3-3Q9BYR6 98 aa9.42□□□□□ -0.9
CPSF3-204ENST00000489403 KRTAP3-2Q9BYR7 98 aa9.42□□□□□ -0.9
CPSF3-204ENST00000489403 TRBV6-7A0A0A0MS04 114 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 TMEM272A0A1B0GTI8 110 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 DENRO43583 198 aaKnown RBP9.41□□□□□ -0.9
CPSF3-204ENST00000489403 ARL6IP5O75915 188 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 OR2A4O95047 310 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 GSTT2P0CG29 244 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 GSTT2BP0CG30 244 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 HSMCR30P0CW71 290 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 CALRP27797 417 aaKnown RBP9.41□□□□□ -0.9
CPSF3-204ENST00000489403 CBX3Q13185 183 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 TPBGQ13641 420 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 TATDN3Q17R31 274 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 ADAD2Q8NCV1 583 aaKnown RBP9.41□□□□□ -0.9
CPSF3-204ENST00000489403 OR10J5Q8NHC4 309 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 MAFIPQ8WZ33 124 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 PHB2Q99623 299 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 TUBA4BQ9H853 241 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 RETNQ9HD89 108 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 SCN3BQ9NY72 215 aa9.41□□□□□ -0.9
CPSF3-204ENST00000489403 MSGN1A6NI15 193 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 IFNA6P05013 189 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 MECP2P51608 486 aaKnown RBP9.4□□□□□ -0.9
CPSF3-204ENST00000489403 MRPS15P82914 257 aaKnown RBP9.4□□□□□ -0.9
CPSF3-204ENST00000489403 FABP5Q01469 135 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 TAGLNQ01995 201 aaKnown RBP9.4□□□□□ -0.9
CPSF3-204ENST00000489403 TRAM1Q15629 374 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 TNXAQ16473 311 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 RTL8BQ17RB0 113 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 HES5Q5TA89 166 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 IDO2Q6ZQW0 420 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 SRSF12Q8WXF0 261 aaKnown RBP9.4□□□□□ -0.9
CPSF3-204ENST00000489403 DDB2Q92466 427 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 VCXQ9H320 206 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 RAB22AQ9UL26 194 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 V9GY05 133 aa9.4□□□□□ -0.9
CPSF3-204ENST00000489403 TNCP24821 2201 aa9.4□□□□□ -0.91
CPSF3-204ENST00000489403 SHISA3A0PJX4 238 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 LINC00473A8K010 186 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 BMPR1BO00238 502 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 MFNGO00587 321 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 DIRAS3O95661 229 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 PRH1P02810 166 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 OR9G9P0C7N8 305 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 RRASP10301 218 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 GNB3P16520 340 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 PSMA1P25786 263 aaKnown RBP9.39□□□□□ -0.91
CPSF3-204ENST00000489403 DUTP33316 252 aaKnown RBP9.39□□□□□ -0.91
CPSF3-204ENST00000489403 UBE2KP61086 200 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 ZNF45Q02386 682 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 MLLT11Q13015 90 aaPredicted RBP9.39□□□□□ -0.91
CPSF3-204ENST00000489403 EXOSC2Q13868 293 aaKnown RBP9.39□□□□□ -0.91
CPSF3-204ENST00000489403 PRSS8Q16651 343 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 VMA21Q3ZAQ7 101 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 LINC00322Q6ZN03 302 aaPredicted RBP9.39□□□□□ -0.91
CPSF3-204ENST00000489403 TEX45Q8NA69 505 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 OR2K2Q8NGT1 345 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 SNAPC3Q92966 411 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 RAB3CQ96E17 227 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 PLEKHA3Q9HB20 300 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 AKIP1Q9NQ31 210 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 PEMTQ9UBM1 199 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 ZNF230Q9UIE0 474 aaPredicted RBP9.39□□□□□ -0.91
CPSF3-204ENST00000489403 RBM7Q9Y580 266 aaKnown RBP9.39□□□□□ -0.91
CPSF3-204ENST00000489403 CEPT1Q9Y6K0 416 aa9.39□□□□□ -0.91
CPSF3-204ENST00000489403 TRBV9A0A0B4J1U6 114 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 A0A0B4J203 849 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 FAM223BA6NKX1 122 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 MPPED1O15442 326 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 CRYZL1O95825 349 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 SAA1P0DJI8 122 aaPredicted RBP9.38□□□□□ -0.91
CPSF3-204ENST00000489403 CD81P60033 236 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 RHOGP84095 191 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 FAM223AQ8IWN6 122 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 OR10R2Q8NGX6 335 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 ACOT12Q8WYK0 555 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 ADTRPQ96IZ2 230 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 FAM110AQ9BQ89 295 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 GINS4Q9BRT9 223 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 HIPK2Q9H2X6 1198 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 DUSP21Q9H596 190 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 TPRKBQ9Y3C4 175 aa9.38□□□□□ -0.91
CPSF3-204ENST00000489403 PLECQ15149 4684 aaKnown RBP9.37□□□□□ -0.91
CPSF3-204ENST00000489403 IGKV1D-8A0A087WSZ0 117 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 RAB27BO00194 218 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 RGS10O43665 173 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 AIREO43918 545 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 CD7P09564 240 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 HIST1H1DP16402 221 aaKnown RBP9.37□□□□□ -0.91
CPSF3-204ENST00000489403 EDN2P20800 178 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 RANBP1P43487 201 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 PSMD7P51665 324 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 AQP4P55087 323 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 OR10A3P58181 314 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 CD300EQ496F6 205 aaPredicted RBP9.37□□□□□ -0.91
CPSF3-204ENST00000489403 C10orf55Q5SWW7 151 aa9.37□□□□□ -0.91
CPSF3-204ENST00000489403 H1FOOQ8IZA3 346 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms