RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	TAGLN	Q01995	201 aa	Known RBP	14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	MLLT11	Q13015	90 aa	Predicted RBP	14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	RTL8B	Q17RB0	113 aa		14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	C2orf76	Q3KRA6	126 aa		14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	LCN12	Q6JVE5	192 aa		14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	GTSCR1	Q86UQ5	136 aa		14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	BVES	Q8NE79	360 aa		14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	USMG5	Q96IX5	58 aa		14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	PHB2	Q99623	299 aa		14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	THAP7	Q9BT49	309 aa	Predicted RBP	14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905		V9GY05	133 aa		14.03	□□□□□ -0.16
HDAC6-231	ENST00000488905	SRRM4	A7MD48	611 aa	Known RBP	14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	GSTT2	P0CG29	244 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	GSTT2B	P0CG30	244 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	APELA	P0DMC3	54 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	FABP5	Q01469	135 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	HAGH	Q16775	308 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	MRGPRG-AS1	Q2M3A8	158 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	RPEL1	Q2QD12	228 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	HES5	Q5TA89	166 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905		Q8N402	240 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	RAB3C	Q96E17	227 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	SIGLEC8	Q9NYZ4	499 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	RAB22A	Q9UL26	194 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	TPRKB	Q9Y3C4	175 aa		14.02	□□□□□ -0.17
HDAC6-231	ENST00000488905	ALMS1	Q8TCU4	4167 aa		14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	RGS10	O43665	173 aa		14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	RBMXL2	O75526	392 aa	Known RBP	14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	OR2A4	O95047	310 aa		14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	CSN3	P07498	182 aa		14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	RRAS	P10301	218 aa		14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	ADAD2	Q8NCV1	583 aa	Known RBP	14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	MAFIP	Q8WZ33	124 aa		14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	DUSP21	Q9H596	190 aa		14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	RBM7	Q9Y580	266 aa	Known RBP	14.01	□□□□□ -0.17
HDAC6-231	ENST00000488905	MFNG	O00587	321 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	OR9G9	P0C7N8	305 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	GNB3	P16520	340 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	PSMD7	P51665	324 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	AQP4	P55087	323 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	UBE2K	P61086	200 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	TNXA	Q16473	311 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	TATDN3	Q17R31	274 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	VMA21	Q3ZAQ7	101 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	SRSF12	Q8WXF0	261 aa	Known RBP	14	□□□□□ -0.17
HDAC6-231	ENST00000488905	DDB2	Q92466	427 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	GINS4	Q9BRT9	223 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	TUBA4B	Q9H853	241 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	ACOT13	Q9NPJ3	140 aa		14	□□□□□ -0.17
HDAC6-231	ENST00000488905	ZNF230	Q9UIE0	474 aa	Predicted RBP	14	□□□□□ -0.17
HDAC6-231	ENST00000488905		A0A075B6Q4	140 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905		A0A0B4J203	849 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	IZUMO1R	A6ND01	250 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	MSGN1	A6NI15	193 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	CRYZL1	O95825	349 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	HIST1H1D	P16402	221 aa	Known RBP	13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	GADD45A	P24522	165 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	DUT	P33316	252 aa	Known RBP	13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	PRSS8	Q16651	343 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	ADAMTSL5	Q6ZMM2	481 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	IDO2	Q6ZQW0	420 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	TEX45	Q8NA69	505 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	OR10R2	Q8NGX6	335 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	ADTRP	Q96IZ2	230 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	MGLL	Q99685	303 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	CCDC90B	Q9GZT6	254 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	PEMT	Q9UBM1	199 aa		13.99	□□□□□ -0.17
HDAC6-231	ENST00000488905	FAM223B	A6NKX1	122 aa		13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	LINC00473	A8K010	186 aa		13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	MPPED1	O15442	326 aa		13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	IFNA6	P05013	189 aa		13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	EXOSC2	Q13868	293 aa	Known RBP	13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	PRSS48	Q7RTY5	328 aa		13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	FAM223A	Q8IWN6	122 aa		13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	OSR1	Q8TAX0	266 aa	Predicted RBP	13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	ACOT12	Q8WYK0	555 aa		13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	SNAPC3	Q92966	411 aa		13.98	□□□□□ -0.17
HDAC6-231	ENST00000488905	ERICH4	A6NGS2	130 aa		13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	RAB27B	O00194	218 aa		13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	BMPR1B	O00238	502 aa		13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	MAP2K4	P45985	399 aa		13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	OR10A3	P58181	314 aa		13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	RHOG	P84095	191 aa		13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	H1FOO	Q8IZA3	346 aa	Predicted RBP	13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	OR2K2	Q8NGT1	345 aa		13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	AKIP1	Q9NQ31	210 aa		13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	NKX1-2	Q9UD57	310 aa	Predicted RBP	13.97	□□□□□ -0.17
HDAC6-231	ENST00000488905	SHISA3	A0PJX4	238 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	PDCD5	O14737	125 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	AIRE	O43918	545 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	CREBL2	O60519	120 aa	Predicted RBP	13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	PRH1	P02810	166 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	SAA1	P0DJI8	122 aa	Predicted RBP	13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	RAB6A	P20340	208 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	CRHBP	P24387	322 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	MECP2	P51608	486 aa	Known RBP	13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	CD81	P60033	236 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	ZNF45	Q02386	682 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905		Q6ZS49	121 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	CENPO	Q9BU64	300 aa		13.96	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms