RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 RAP1GDS1P52306 607 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 CRYBA4P53673 196 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 CCL23P55773 120 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 DNAJB13P59910 316 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 MAXP61244 160 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 VSNL1P62760 191 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 GTF2BQ00403 316 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 STX5Q13190 355 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 WDR43Q15061 677 aaKnown RBP eCLIP0.79□□□□□ -2.28
SMC4-220ENST00000488017 CDK10Q15131 360 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 BSXQ3C1V8 233 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 CCSMST1Q4G0I0 132 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 ELP2Q6IA86 826 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 GLYATQ6IB77 296 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 UGT2A3Q6UWM9 527 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PLEKHG7Q6ZR37 379 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PID1Q7Z2X4 250 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 FAM19A1Q7Z5A9 133 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 RBM45Q8IUH3 476 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 HS3ST5Q8IZT8 346 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 FAM58AQ8N1B3 248 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 RIBC1Q8N443 379 aaPredicted RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 C9orf62Q8N4C0 152 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 C17orf78Q8N4C9 275 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 OR10D4PQ8NGN7 298 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PYDC1Q8WXC3 89 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 AP3S1Q92572 193 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 BORCS5Q969J3 196 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 VAT1Q99536 393 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 NIPSNAP1Q9BPW8 284 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 ANAPC13Q9BS18 74 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 TMEM208Q9BTX3 173 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 HIGD2AQ9BW72 106 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PCBD2Q9H0N5 130 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 GOLPH3Q9H4A6 298 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PRORYQ9H606 182 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PLEKHA1Q9HB21 404 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 ACOT13Q9NPJ3 140 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 BIN3Q9NQY0 253 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 BABAM2Q9NXR7 383 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 C3orf18Q9UK00 162 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 GUCA1BQ9UMX6 200 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 C14orf166Q9Y224 244 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 SNX24Q9Y343 169 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 ZNF337Q9Y3M9 751 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 URGCP-MRPS24S4R325 110 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 HSPE1-MOB4S4R3N1 261 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PATJQ8NI35 1801 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 USP42Q9H9J4 1324 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 NYNRINQ9P2P1 1898 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 A0A1W2PP64 1363 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 ANKRD36A6QL64 1941 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 LCTP09848 1927 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 DLG5Q8TDM6 1919 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 EML5Q05BV3 1969 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 EXPH5Q8NEV8 1989 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 KIAA1549Q9HCM3 1950 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 PLCH2O75038 1416 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 DAPK1P53355 1430 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 TROQ12816 1431 aaPredicted RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 FGD6Q6ZV73 1430 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 MYOM2P54296 1465 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 BCL9LQ86UU0 1499 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 MAGI3Q5TCQ9 1506 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 ZFYVE16Q7Z3T8 1539 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 SYNJ1O43426 1573 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 EIF4G3O43432 1585 aaKnown RBP0.79□□□□□ -2.28
SMC4-220ENST00000488017 GLI2P10070 1586 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 KDM5CP41229 1560 aa0.79□□□□□ -2.28
SMC4-220ENST00000488017 NESP48681 1621 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TOP2BQ02880 1626 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 HECW1Q76N89 1606 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 IQGAP1P46940 1657 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CLTCQ00610 1675 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 ADGBQ8N7X0 1667 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ADAMTS7Q9UKP4 1686 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 XRN1Q8IZH2 1706 aaKnown RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 WDR90Q96KV7 1748 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ATAD5Q96QE3 1844 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 RALGAPA2Q2PPJ7 1873 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 MCM3APO60318 1980 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CCDC88CQ9P219 2028 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 A0A1B0GTI1 187 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SMIM31A0A1B0GVY4 71 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 TMEM213A2RRL7 107 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 MGAT4DA6NG13 374 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 G3V3Q6 166 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 RNASEK-C17orf49H0YIS7 233 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 H3BP45 60 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 ZNF593O00488 134 aaPredicted RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 UPK2O00526 184 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CXCR6O00574 342 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 KPNA4O00629 521 aaPredicted RBP0.78□□□□□ -2.28
SMC4-220ENST00000488017 OVOL1O14753 267 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 AZIN1O14977 448 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SLC31A1O15431 190 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SGCEO43556 437 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 CST8O60676 142 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 SC5DO75845 299 aa0.78□□□□□ -2.28
SMC4-220ENST00000488017 VAPBO95292 243 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms