RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 THAP7Q9BT49 309 aaPredicted RBP12.26□□□□□ -0.45
COL7A1-204ENST00000462475 COA4Q9NYJ1 87 aa12.26□□□□□ -0.45
COL7A1-204ENST00000462475 PEF1Q9UBV8 284 aaKnown RBP12.26□□□□□ -0.45
COL7A1-204ENST00000462475 PLECQ15149 4684 aaKnown RBP12.25□□□□□ -0.45
COL7A1-204ENST00000462475 TRBV6-7A0A0A0MS04 114 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 H0Y980 276 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 SHOXO15266 292 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 CSN3P07498 182 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 AADACP22760 399 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 MRPS15P82914 257 aaKnown RBP12.25□□□□□ -0.45
COL7A1-204ENST00000462475 TRAM1Q15629 374 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 HES5Q5TA89 166 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 RAB3CQ96E17 227 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 V9GY05 133 aa12.25□□□□□ -0.45
COL7A1-204ENST00000462475 IZUMO1RA6ND01 250 aa12.24□□□□□ -0.45
COL7A1-204ENST00000462475 PSMA1P25786 263 aaKnown RBP12.24□□□□□ -0.45
COL7A1-204ENST00000462475 MLLT11Q13015 90 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-204ENST00000462475 CBX3Q13185 183 aa12.24□□□□□ -0.45
COL7A1-204ENST00000462475 RTL8BQ17RB0 113 aa12.24□□□□□ -0.45
COL7A1-204ENST00000462475 ADAMTSL5Q6ZMM2 481 aa12.24□□□□□ -0.45
COL7A1-204ENST00000462475 ADAD2Q8NCV1 583 aaKnown RBP12.24□□□□□ -0.45
COL7A1-204ENST00000462475 OR10J5Q8NHC4 309 aa12.24□□□□□ -0.45
COL7A1-204ENST00000462475 USMG5Q96IX5 58 aa12.24□□□□□ -0.45
COL7A1-204ENST00000462475 PHB2Q99623 299 aa12.24□□□□□ -0.45
COL7A1-204ENST00000462475 DUSP21Q9H596 190 aa12.24□□□□□ -0.45
COL7A1-204ENST00000462475 ZNF230Q9UIE0 474 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-204ENST00000462475 A0A075B6Q4 140 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 MSGN1A6NI15 193 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 MFNGO00587 321 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 RGS10O43665 173 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 GNB3P16520 340 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 AQP4P55087 323 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 TNXAQ16473 311 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 RPEL1Q2QD12 228 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 LCN12Q6JVE5 192 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 IDO2Q6ZQW0 420 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 GTSCR1Q86UQ5 136 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 DDB2Q92466 427 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 NKX1-2Q9UD57 310 aaPredicted RBP12.23□□□□□ -0.45
COL7A1-204ENST00000462475 RAB22AQ9UL26 194 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 TPRKBQ9Y3C4 175 aa12.23□□□□□ -0.45
COL7A1-204ENST00000462475 LINC00473A8K010 186 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 DIRAS3O95661 229 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 CRYZL1O95825 349 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 PRH1P02810 166 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 OR9G9P0C7N8 305 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 HIST1H1DP16402 221 aaKnown RBP12.22□□□□□ -0.45
COL7A1-204ENST00000462475 MAP2K4P45985 399 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 OR10A3P58181 314 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 UBE2KP61086 200 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 TAGLNQ01995 201 aaKnown RBP12.22□□□□□ -0.45
COL7A1-204ENST00000462475 PRSS8Q16651 343 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 Q8N402 240 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 OR10R2Q8NGX6 335 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 SRSF12Q8WXF0 261 aaKnown RBP12.22□□□□□ -0.45
COL7A1-204ENST00000462475 CCDC90BQ9GZT6 254 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 TUBA4BQ9H853 241 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 RETNQ9HD89 108 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 SIGLEC8Q9NYZ4 499 aa12.22□□□□□ -0.45
COL7A1-204ENST00000462475 RBM7Q9Y580 266 aaKnown RBP12.22□□□□□ -0.45
COL7A1-204ENST00000462475 IGKV1D-8A0A087WSZ0 117 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 SHISA3A0PJX4 238 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 RAB27BO00194 218 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 BMPR1BO00238 502 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 OR2A4O95047 310 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 RRASP10301 218 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 DUTP33316 252 aaKnown RBP12.21□□□□□ -0.45
COL7A1-204ENST00000462475 RHOGP84095 191 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 ZNF45Q02386 682 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 EXOSC2Q13868 293 aaKnown RBP12.21□□□□□ -0.45
COL7A1-204ENST00000462475 TATDN3Q17R31 274 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 VMA21Q3ZAQ7 101 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 TEX45Q8NA69 505 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 NRG4Q8WWG1 115 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 ACOT12Q8WYK0 555 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 MGLLQ99685 303 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 GINS4Q9BRT9 223 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 ACOT13Q9NPJ3 140 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 AKIP1Q9NQ31 210 aa12.21□□□□□ -0.45
COL7A1-204ENST00000462475 TNCP24821 2201 aa12.21□□□□□ -0.46
COL7A1-204ENST00000462475 A0A0B4J203 849 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 MPPED1O15442 326 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 MECP2P51608 486 aaKnown RBP12.2□□□□□ -0.46
COL7A1-204ENST00000462475 PSMD7P51665 324 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 SSX1Q16384 188 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 C10orf55Q5SWW7 151 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 PRSS48Q7RTY5 328 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 H1FOOQ8IZA3 346 aaPredicted RBP12.2□□□□□ -0.46
COL7A1-204ENST00000462475 SNAPC3Q92966 411 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 ADTRPQ96IZ2 230 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 ZNF430Q9H8G1 570 aaPredicted RBP12.2□□□□□ -0.46
COL7A1-204ENST00000462475 PLEKHA3Q9HB20 300 aa12.2□□□□□ -0.46
COL7A1-204ENST00000462475 FAM223BA6NKX1 122 aa12.19□□□□□ -0.46
COL7A1-204ENST00000462475 IFITM5A6NNB3 132 aa12.19□□□□□ -0.46
COL7A1-204ENST00000462475 IFNA6P05013 189 aa12.19□□□□□ -0.46
COL7A1-204ENST00000462475 SAA1P0DJI8 122 aaPredicted RBP12.19□□□□□ -0.46
COL7A1-204ENST00000462475 CRHBPP24387 322 aa12.19□□□□□ -0.46
COL7A1-204ENST00000462475 GADD45AP24522 165 aa12.19□□□□□ -0.46
COL7A1-204ENST00000462475 RANBP1P43487 201 aa12.19□□□□□ -0.46
COL7A1-204ENST00000462475 ARFRP1Q13795 201 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms