RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 H3BSA7 217 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 UPK1AO00322 258 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 AQP9O43315 295 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 OR5F1O95221 314 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 NSA2O95478 260 aaKnown RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 FADS2O95864 444 aaKnown RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 APOA1P02647 267 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 OPN1SWP03999 348 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 HMGN2P05204 90 aaKnown RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 OR12D1P0DN82 309 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 PIPP12273 146 aaPredicted RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 CPMP14384 443 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 UGT2B7P16662 529 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 PSMB5P28074 263 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ELK4P28324 431 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 OR1E2P47887 323 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 IDH2P48735 452 aaKnown RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 PSMB2P49721 201 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 DAPP51397 102 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 RAB38P57729 211 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 TAS2R43P59537 309 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 RAB8AP61006 207 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 SNRPGP62308 76 aaKnown RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 SLC35A2P78381 396 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ZNF816Q0VGE8 651 aaPredicted RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 TSPAN31Q12999 210 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 TMED1Q13445 227 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 PMVKQ15126 192 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 NEDD8Q15843 81 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 MOGQ16653 247 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ARHGAP11BQ3KRB8 267 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 DEFB134Q4QY38 66 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 SYT6Q5T7P8 510 aaPredicted RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 FAHD1Q6P587 224 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 TNFAIP8L2Q6P589 184 aaPredicted RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 DHRS4L2Q6PKH6 230 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 PDPNQ86YL7 162 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ZNF101Q8IZC7 436 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 CA13Q8N1Q1 262 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 OSR2Q8N2R0 312 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 OR2Z1Q8NG97 314 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 OR8K3Q8NH51 312 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 OR5AK3PQ8NH89 298 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 PIGXQ8TBF5 258 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ZNF675Q8TD23 568 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 HAVCR2Q8TDQ0 301 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 GNPDA2Q8TDQ7 276 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 SLC37A2Q8TED4 501 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 BORCS5Q969J3 196 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 MAL2Q969L2 176 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ISOC1Q96CN7 298 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 METTL26Q96S19 204 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 PITX2Q99697 317 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ZNF2Q9BSG1 426 aaPredicted RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 TMED9Q9BVK6 235 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ZNF717Q9BY31 904 aaPredicted RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 DUSP21Q9H596 190 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ACOT13Q9NPJ3 140 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 PRTFDC1Q9NRG1 225 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 ACER3Q9NUN7 267 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 NXT1Q9UKK6 140 aaKnown RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 BAIAP2Q9UQB8 552 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 MMACHCQ9Y4U1 282 aa2.34□□□□□ -2.03
VPS41-210ENST00000462429 COL27A1Q8IZC6 1860 aaPredicted RBP2.34□□□□□ -2.03
VPS41-210ENST00000462429 ALPK3Q96L96 1907 aa2.34□□□□□ -2.04
VPS41-210ENST00000462429 GOLGA4Q13439 2230 aaKnown RBP2.34□□□□□ -2.04
VPS41-210ENST00000462429 THADAQ6YHU6 1953 aa2.34□□□□□ -2.04
VPS41-210ENST00000462429 HEATR5BQ9P2D3 2071 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 MUC22E2RYF6 1773 aaPredicted RBP2.33□□□□□ -2.04
VPS41-210ENST00000462429 HTTP42858 3142 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 F5P12259 2224 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 A0A0G2JMP0 313 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 A0A0X1KG70 313 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 TRAPPC13A5PLN9 417 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 ZNF879B4DU55 563 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CLDN25C9JDP6 229 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CCRL2O00421 344 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 KPNA4O00629 521 aaPredicted RBP2.33□□□□□ -2.04
VPS41-210ENST00000462429 OR2B3O76000 313 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 IFNGP01579 166 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 IGKV1-39P01597 117 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CD74P04233 296 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 IGKV1D-39P04432 117 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 IFNA16P05015 189 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CDK1P06493 297 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CD36P16671 472 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CFL1P23528 166 aaKnown RBP2.33□□□□□ -2.04
VPS41-210ENST00000462429 FKBP2P26885 142 aaKnown RBP2.33□□□□□ -2.04
VPS41-210ENST00000462429 PSMB9P28065 219 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 HOXA6P31267 233 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CAPZBP47756 277 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 OR12D2P58182 307 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 DEFA1P59665 94 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 DEFA3P59666 94 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 UBE2IP63279 158 aaKnown RBP2.33□□□□□ -2.04
VPS41-210ENST00000462429 EMX1Q04741 257 aaPredicted RBP2.33□□□□□ -2.04
VPS41-210ENST00000462429 PMS2P3Q13401 168 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 ZNF846Q147U1 533 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 GUSBP1Q15486 140 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 TRAM1Q15629 374 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms