RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 ATG12O94817 140 aa21.76■■□□□ 1.07
MSX1-201ENST00000382723 Q6ZRM9 215 aa21.76■■□□□ 1.07
MSX1-201ENST00000382723 THAP6Q8TBB0 222 aa21.76■■□□□ 1.07
MSX1-201ENST00000382723 TBX15Q96SF7 602 aa21.76■■□□□ 1.07
MSX1-201ENST00000382723 NABP2Q9BQ15 211 aa21.76■■□□□ 1.07
MSX1-201ENST00000382723 MED13LQ71F56 2210 aa21.76■■□□□ 1.07
MSX1-201ENST00000382723 NAV2Q8IVL1 2488 aa21.75■■□□□ 1.07
MSX1-201ENST00000382723 NXPH3O95157 252 aa21.75■■□□□ 1.07
MSX1-201ENST00000382723 MBPP02686 304 aaPredicted RBP21.75■■□□□ 1.07
MSX1-201ENST00000382723 RTL8BQ17RB0 113 aa21.75■■□□□ 1.07
MSX1-201ENST00000382723 OR4D5Q8NGN0 318 aa21.75■■□□□ 1.07
MSX1-201ENST00000382723 MBD2Q9UBB5 411 aa21.75■■□□□ 1.07
MSX1-201ENST00000382723 CACNG5Q9UF02 275 aa21.75■■□□□ 1.07
MSX1-201ENST00000382723 BOLA1Q9Y3E2 137 aa21.75■■□□□ 1.07
MSX1-201ENST00000382723 LSM5Q9Y4Y9 91 aaKnown RBP21.75■■□□□ 1.07
MSX1-201ENST00000382723 MMP24Q9Y5R2 645 aa21.75■■□□□ 1.07
MSX1-201ENST00000382723 A0A096LNT2 108 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 MARCH11A6NNE9 402 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 H7C2Y5 167 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 SSX9Q7RTT3 188 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 VKORC1L1Q8N0U8 176 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 MAPK1IP1LQ8NDC0 245 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 A0A1B0GU03 582 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 RNF223E7ERA6 249 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 H0YIZ8 118 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 H0YJW9 148 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 APOA2P02652 100 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 IGKV1-16P04430 117 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 OR1S1Q8NH92 325 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 LHX4Q969G2 390 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 RPEQ96AT9 228 aa21.74■■□□□ 1.07
MSX1-201ENST00000382723 ODF3BA8MYP8 253 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 ARPC5O15511 151 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 MSMBP08118 114 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 HTR1DP28221 377 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 SMCO1Q147U7 214 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 LAMTOR1Q6IAA8 161 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 H2BFWTQ7Z2G1 175 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 C9orf62Q8N4C0 152 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 DMBX1Q8NFW5 382 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 RNF126Q9BV68 326 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 OR5AC2Q9NZP5 309 aa21.73■■□□□ 1.07
MSX1-201ENST00000382723 CXorf66Q5JRM2 361 aaPredicted RBP21.72■■□□□ 1.07
MSX1-201ENST00000382723 LDLRAD2Q5SZI1 272 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 OR5AN1Q8NGI8 311 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 PLSCR3Q9NRY6 295 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 HSPB11Q9Y547 144 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 MAP1AP78559 2803 aaPredicted RBP21.72■■□□□ 1.07
MSX1-201ENST00000382723 GAPDHP04406 335 aaKnown RBP21.72■■□□□ 1.07
MSX1-201ENST00000382723 SLC25A4P12235 298 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 PAX8Q06710 450 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 LHFPL4Q7Z7J7 247 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 ZNF546Q86UE3 836 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 Q96MF0 132 aa21.72■■□□□ 1.07
MSX1-201ENST00000382723 IGHV3-72A0A0B4J1Y9 119 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 B4DSR2 109 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 LY6LH3BQJ8 138 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 KCNAB3O43448 404 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 SLC25A6P12236 298 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 NQO2P16083 231 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 ERVK-16P61578 105 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 REG4Q9BYZ8 158 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 DPM3Q9P2X0 92 aa21.71■■□□□ 1.07
MSX1-201ENST00000382723 LEUTXA8MZ59 168 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 K7EPK0 472 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 P0C879 139 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 PET100P0DJ07 73 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 NKX2-1P43699 371 aaPredicted RBP21.7■■□□□ 1.07
MSX1-201ENST00000382723 TPTE2P1Q5T6R2 138 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 PRSS54Q6PEW0 395 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 MOB3BQ86TA1 216 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 FAM71E2Q8N5Q1 922 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 DCUN1D4Q92564 292 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 HILPDAQ9Y5L2 63 aa21.7■■□□□ 1.07
MSX1-201ENST00000382723 IGHV1-3A0A0C4DH29 117 aa21.7■■□□□ 1.06
MSX1-201ENST00000382723 HMSDA8MTL9 139 aa21.7■■□□□ 1.06
MSX1-201ENST00000382723 TAGLNQ01995 201 aaKnown RBP21.7■■□□□ 1.06
MSX1-201ENST00000382723 LGALSLQ3ZCW2 172 aaPredicted RBP21.7■■□□□ 1.06
MSX1-201ENST00000382723 MAGT1Q9H0U3 335 aa21.7■■□□□ 1.06
MSX1-201ENST00000382723 ABCA2Q9BZC7 2435 aa21.7■■□□□ 1.06
MSX1-201ENST00000382723 ST8SIA3O43173 380 aa21.69■■□□□ 1.06
MSX1-201ENST00000382723 PITX3O75364 302 aa21.69■■□□□ 1.06
MSX1-201ENST00000382723 RLN2P04090 185 aa21.69■■□□□ 1.06
MSX1-201ENST00000382723 RRASP10301 218 aa21.69■■□□□ 1.06
MSX1-201ENST00000382723 DHRS7BQ6IAN0 325 aaPredicted RBP21.69■■□□□ 1.06
MSX1-201ENST00000382723 KRTAP1-3Q8IUG1 177 aa21.69■■□□□ 1.06
MSX1-201ENST00000382723 DEDDO75618 318 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 CXCL2P19875 107 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 PAX6P26367 422 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 CEACAM3P40198 252 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 AP2S1P53680 142 aaPredicted RBP21.68■■□□□ 1.06
MSX1-201ENST00000382723 LGALS4P56470 323 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 LOXL1Q08397 574 aaPredicted RBP21.68■■□□□ 1.06
MSX1-201ENST00000382723 PRSS57Q6UWY2 283 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 NSG2Q9Y328 171 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 WASHC3Q9Y3C0 194 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 POMT1Q9Y6A1 747 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 POLR2GP62487 172 aaKnown RBP eCLIP21.68■■□□□ 1.06
MSX1-201ENST00000382723 RHOVQ96L33 236 aa21.68■■□□□ 1.06
MSX1-201ENST00000382723 TMEM140Q9NV12 185 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms