RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 MMP24Q9Y5R2 645 aa9.45□□□□□ -0.9
SNCA-202ENST00000345009 ANKRD20A5PA0PJZ0 165 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 CLPSL1A2RUU4 121 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 GPR31O00270 319 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 NBR2O15453 112 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 PGAM2P15259 253 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 COMPP49747 757 aaPredicted RBP9.44□□□□□ -0.9
SNCA-202ENST00000345009 UCP3P55916 312 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 PLGLAQ15195 96 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 SCGB2B2Q4G0G5 96 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 ABCA11PQ4W5N1 156 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 GLDNQ6ZMI3 551 aaPredicted RBP9.44□□□□□ -0.9
SNCA-202ENST00000345009 Q6ZSV7 163 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 KCTD9Q7L273 389 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 Q8N6K4 173 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 C3orf56Q8N813 242 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 BVESQ8NE79 360 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 ZFAND1Q8TCF1 268 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 CD300LFQ8TDQ1 290 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 SCGB3A2Q96PL1 93 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 LIN7CQ9NUP9 197 aaKnown RBP9.44□□□□□ -0.9
SNCA-202ENST00000345009 MCUBQ9NWR8 336 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 RNF114Q9Y508 228 aa9.44□□□□□ -0.9
SNCA-202ENST00000345009 CENPXA8MT69 81 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 SHOXO15266 292 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 SPDEFO95238 335 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 GNRHRP30968 328 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 BLCAPP62952 87 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 ZNF79Q15937 498 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 C9orf152Q5JTZ5 239 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 AADACL3Q5VUY0 350 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 ZNF57Q68EA5 555 aaPredicted RBP9.43□□□□□ -0.9
SNCA-202ENST00000345009 SHISA2Q6UWI4 295 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 MFSD4AQ8N468 514 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 TCTEX1D1Q8N7M0 179 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 C5orf56Q8N8D9 126 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 NPBQ8NG41 125 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 OR4S2Q8NH73 311 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 LINC01006Q8NI28 216 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 OSR1Q8TAX0 266 aaPredicted RBP9.43□□□□□ -0.9
SNCA-202ENST00000345009 ZNF486Q96H40 463 aaPredicted RBP9.43□□□□□ -0.9
SNCA-202ENST00000345009 SRRQ9GZT4 340 aa9.43□□□□□ -0.9
SNCA-202ENST00000345009 KCNAB3O43448 404 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 TNFSF12O43508 249 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 FCGR3BO75015 233 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 IGLV2-14P01704 120 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 VDAC2P45880 294 aaPredicted RBP9.42□□□□□ -0.9
SNCA-202ENST00000345009 F2RL1P55085 397 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 SURF2Q15527 256 aaPredicted RBP9.42□□□□□ -0.9
SNCA-202ENST00000345009 TMEM177Q53S58 311 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 AWAT1Q58HT5 328 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 LIN54Q6MZP7 749 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 ZNF818PQ6ZRF7 136 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 FOXRED2Q8IWF2 684 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 Q8N2B8 174 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 OR4C16Q8NGL9 310 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 SPATA3Q8NHX4 192 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 DDB2Q92466 427 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 HARBI1Q96MB7 349 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 RSRP1Q9BUV0 290 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 GON7Q9BXV9 100 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 PLSCR3Q9NRY6 295 aa9.42□□□□□ -0.9
SNCA-202ENST00000345009 LINC00473A8K010 186 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 RRHO14718 337 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 RBFOX2O43251 390 aaKnown RBP eCLIP9.41□□□□□ -0.9
SNCA-202ENST00000345009 CREBL2O60519 120 aaPredicted RBP9.41□□□□□ -0.9
SNCA-202ENST00000345009 PGLYRP1O75594 196 aaPredicted RBP9.41□□□□□ -0.9
SNCA-202ENST00000345009 CRYZL1O95825 349 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 HRASP01112 189 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 IGKV1-16P04430 117 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 MDKP21741 143 aaPredicted RBP9.41□□□□□ -0.9
SNCA-202ENST00000345009 LINC00205P59089 165 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 C5orf64Q2M2E5 130 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 VMA21Q3ZAQ7 101 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 IDO2Q6ZQW0 420 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 LHFPL1Q86WI0 220 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 FAM71E2Q8N5Q1 922 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 Q8N9W7 124 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 CCDC71LQ8N9Z2 235 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 OR4D10Q8NGI6 311 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 OR51S1Q8NGJ8 323 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 VSTM2AQ8TAG5 236 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 C5orf30Q96GV9 206 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 WDR12Q9GZL7 423 aaKnown RBP9.41□□□□□ -0.9
SNCA-202ENST00000345009 ZNF702PQ9H963 129 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 COPZ2Q9P299 210 aa9.41□□□□□ -0.9
SNCA-202ENST00000345009 C14orf166Q9Y224 244 aaKnown RBP9.41□□□□□ -0.9
SNCA-202ENST00000345009 NAP1L6A6NFF2 107 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 B3GALNT1O75752 331 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 NDUFA3O95167 84 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 AMY1AP04745 511 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 PPP5CP53041 499 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 EIF4EBP1Q13541 118 aaPredicted RBP9.4□□□□□ -0.9
SNCA-202ENST00000345009 KLF9Q13886 244 aaPredicted RBP9.4□□□□□ -0.9
SNCA-202ENST00000345009 PSG5Q15238 335 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 PHLDA2Q53GA4 152 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 SLC35E3Q7Z769 313 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 CENPVQ7Z7K6 275 aaPredicted RBP9.4□□□□□ -0.9
SNCA-202ENST00000345009 SPAG16Q8N0X2 631 aa9.4□□□□□ -0.9
SNCA-202ENST00000345009 OR51H1Q8NH63 302 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms