RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SF3B5Q9BWJ5 86 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM38BQ9NVV0 291 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PILRAQ9UKJ1 303 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ALS2Q96Q42 1657 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 KIAA1551Q9HCM1 1747 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF561-AS1K7EIQ3 104 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ANOS1P23352 680 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 FAM3BP58499 235 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SP5Q6BEB4 398 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RNF165Q6ZSG1 346 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 C9orf40Q8IXQ3 194 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 GBGT1Q8N5D6 347 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 VGLL2Q8N8G2 317 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 WIPI2Q9Y4P8 454 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 DNAJC15Q9Y5T4 150 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV8-2A0A0B4J237 113 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV8-4A0A0B4J246 113 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 FAM74A7A6NL05 159 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SIRPB1O00241 398 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 CST4P01036 141 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SOD3P08294 240 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SCTP09683 121 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 LINC00869P0C866 280 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 GALP22466 123 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 HOXA6P31267 233 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RPS20P60866 119 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 HLA-DRB3P79483 266 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 Q499Y3 187 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ELFN2Q5R3F8 820 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 C17orf99Q6UX52 265 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 CLEC20AQ6ZU45 233 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 GLRX5Q86SX6 157 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF107Q9UII5 783 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RNF115Q9Y4L5 304 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TRBV5-3A0A0A0MS03 114 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TRBV4-1A0A0J9YWV2 114 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 C7orf66A4D0T2 115 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 DPM2O94777 84 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 AMY1AP04745 511 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MAGEA5P43359 124 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 C18orf21Q32NC0 220 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ACER2Q5QJU3 275 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MRGPRDQ8TDS7 321 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 DNASE2BQ8WZ79 361 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF775Q96BV0 537 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 P2RX4Q99571 388 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 OVOL2Q9BRP0 275 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SYT11Q9BT88 431 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 REPIN1Q9BWE0 567 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF275Q9NSD4 429 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TAS2R4Q9NYW5 299 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RER1O15258 196 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 NKX2-2O95096 273 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MBPP02686 304 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 CD74P04233 296 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 CEACAM6P40199 344 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 CTAG1AP78358 180 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ACVR1Q04771 509 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SLC38A11Q08AI6 406 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 OR1Q1Q15612 314 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PPP1R1CQ8WVI7 109 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 OXGR1Q96P68 337 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 QTRT1Q9BXR0 403 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RNF7Q9UBF6 113 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 HSF4Q9ULV5 492 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ROBO1Q9Y6N7 1651 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SETXQ7Z333 2677 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM129A0AVI4 362 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SOD1P00441 154 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 IGHV4-34P06331 123 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 FOLR2P14207 255 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF124Q15973 351 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SH2D6Q7Z4S9 175 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 OR1P1Q8NH06 330 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF48Q96MX3 618 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 FOXB1Q99853 325 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 LHX9Q9NQ69 397 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SLC17A5Q9NRA2 495 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 GSN-AS1Q9NRJ2 163 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 MPZL1O95297 269 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TM4SF1P30408 202 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 FUT5Q11128 374 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 TNXAQ16473 311 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 C11orf87Q6NUJ2 197 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 Q6ZSR9 355 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 OR4C3Q8NH37 302 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 PDLIM5Q96HC4 596 aaKnown RBP2.44□□□□□ -2.02
SCN1A-219ENST00000641575 SLC25A22Q9H936 323 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 GALPQ9UBC7 116 aa2.44□□□□□ -2.02
SCN1A-219ENST00000641575 P01737 135 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 RNF224P0DH78 156 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 DLX6P56179 175 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ZP4Q12836 540 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 LDLRAD2Q5SZI1 272 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OR5P3Q8WZ94 311 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TNFRSF14Q92956 283 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PIK3IP1Q96FE7 263 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM204Q9BSN7 226 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PLA2G12AQ9BZM1 189 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms