RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 KCNG3Q8TAE7 436 aa8.15□□□□□ -1.1
LIG1-213ENST00000596672 IL1F10Q8WWZ1 152 aa8.15□□□□□ -1.1
LIG1-213ENST00000596672 KCTD12Q96CX2 325 aaKnown RBP8.15□□□□□ -1.1
LIG1-213ENST00000596672 DIRAS2Q96HU8 199 aa8.15□□□□□ -1.1
LIG1-213ENST00000596672 NEDD4LQ96PU5 975 aa8.15□□□□□ -1.1
LIG1-213ENST00000596672 PECRQ9BY49 303 aa8.15□□□□□ -1.1
LIG1-213ENST00000596672 C11orf54Q9H0W9 315 aaPredicted RBP8.15□□□□□ -1.1
LIG1-213ENST00000596672 CST11Q9H112 138 aa8.15□□□□□ -1.1
LIG1-213ENST00000596672 Q9N2K0 584 aa8.15□□□□□ -1.1
LIG1-213ENST00000596672 ELF5Q9UKW6 265 aaPredicted RBP8.15□□□□□ -1.1
LIG1-213ENST00000596672 RNF150Q9ULK6 438 aa8.15□□□□□ -1.1
LIG1-213ENST00000596672 PAIP2BQ9ULR5 123 aaKnown RBP8.15□□□□□ -1.1
LIG1-213ENST00000596672 TMEM272A0A1B0GTI8 110 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 FABP12A6NFH5 140 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 NUDT19A8MXV4 375 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 H0YJW9 148 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 I3L521 148 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 EIF4EP06730 217 aaKnown RBP8.14□□□□□ -1.11
LIG1-213ENST00000596672 ELANEP08246 267 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 VEGFCP49767 419 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 GNB1P62873 340 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 ZNF45Q02386 682 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 MMDQ15546 238 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 RAB11BQ15907 218 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 MRGPRG-AS1Q2M3A8 158 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 CNIH2Q6PI25 160 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 COMMD1Q8N668 190 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 ZBTB8BQ8NAP8 495 aaPredicted RBP8.14□□□□□ -1.11
LIG1-213ENST00000596672 OR8H1Q8NGG4 311 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 LGALS14Q8TCE9 139 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 FAM3DQ96BQ1 224 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 GALMQ96C23 342 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 OR5B12Q96R08 314 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 RASL11BQ9BPW5 248 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 ALX4Q9H161 411 aaPredicted RBP8.14□□□□□ -1.11
LIG1-213ENST00000596672 OR51J1Q9H342 316 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 FBXL15Q9H469 300 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 TPSG1Q9NRR2 321 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 KCNIP1Q9NZI2 227 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 ABRACLQ9P1F3 81 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 SLC23A1Q9UHI7 598 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 ZNF580Q9UK33 172 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 ADAM30Q9UKF2 790 aa8.14□□□□□ -1.11
LIG1-213ENST00000596672 STARD9Q9P2P6 4700 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 IGKV1D-8A0A087WSZ0 117 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 NBR2O15453 112 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 TXNL1O43396 289 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 HLA-DRB1P01911 266 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 CD40LGP29965 261 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 ETV6P41212 452 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 PPP5CP53041 499 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 SLC35B1P78383 322 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 CX3CL1P78423 397 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 SNX29P2Q8IUI4 249 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 ZNF491Q8N8L2 437 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 ZNF383Q8NA42 475 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 OR5AN1Q8NGI8 311 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 SETD6Q8TBK2 473 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 PLEKHJ1Q9NW61 149 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 STEAP1Q9UHE8 339 aa8.13□□□□□ -1.11
LIG1-213ENST00000596672 LSM4Q9Y4Z0 139 aaKnown RBP8.13□□□□□ -1.11
LIG1-213ENST00000596672 RAB27BO00194 218 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 IGKV1-16P04430 117 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 ARSBP15848 533 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 CEACAM6P40199 344 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 HLA-DRB3P79483 266 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 OXA1LQ15070 435 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 PYDC2Q56P42 97 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 IGSF11Q5DX21 431 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 DEFB121Q5J5C9 76 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 CXorf66Q5JRM2 361 aaPredicted RBP8.12□□□□□ -1.11
LIG1-213ENST00000596672 OR2AK2Q8NG84 335 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 MAFIPQ8WZ33 124 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 PTX4Q96A99 478 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 PRR25Q96S07 402 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 SOSTQ9BQB4 213 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 FAM103A1Q9BTL3 118 aaKnown RBP8.12□□□□□ -1.11
LIG1-213ENST00000596672 PARP11Q9NR21 331 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 EXTL2Q9UBQ6 330 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 HSF4Q9ULV5 492 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 SPATA2Q9UM82 520 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 NUBP2Q9Y5Y2 271 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 V9GYH0 126 aa8.12□□□□□ -1.11
LIG1-213ENST00000596672 TRAV41A0A0B4J266 112 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 ITGB1BP1O14713 200 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 RRHO14718 337 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 ARPC1BO15143 372 aaKnown RBP8.11□□□□□ -1.11
LIG1-213ENST00000596672 RBMXL2O75526 392 aaKnown RBP8.11□□□□□ -1.11
LIG1-213ENST00000596672 DUS4LO95620 317 aaKnown RBP8.11□□□□□ -1.11
LIG1-213ENST00000596672 IGLV2-23P01705 113 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 APOA1P02647 267 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 RAB9AP51151 201 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 CRIP2P52943 208 aaPredicted RBP8.11□□□□□ -1.11
LIG1-213ENST00000596672 RAB25P57735 213 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 IFITM3Q01628 133 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 PJVKQ0ZLH3 352 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 IL18Q14116 193 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 PSG5Q15238 335 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 UBE2NLQ5JXB2 153 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 LIN54Q6MZP7 749 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms